CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRPN (Ribosome-recycling factor OS=Streptococcus pneumoniae GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 73/143 (51.05%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SD+G+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DEHSC (Ribosome-recycling factor OS=Dehalococcoides sp. (strain CBDB1) GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 70/143 (48.95%), Postives = 105/143 (73.43%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            S+PA+++ I VEY G P  +  +A I+ PD   + IQP+D+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V K+ EE K+A+RN+RRDA+   +KL+K K++S+D++K  S  LQK+TD ++ K D +
Sbjct:   32 SSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVRRDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DEHE1 (Ribosome-recycling factor OS=Dehalococcoides ethenogenes (strain 195) GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 70/143 (48.95%), Postives = 106/143 (74.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            S+PA+++ I+VEY G P  +  +A I  PD   + IQP+D+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V+K+ EE K+A+RN+RRDA+   +KL+K K++S+D++K  S  LQK+TD ++ K D +
Sbjct:   32 SSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNVRRDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRZP (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain P1031) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD+I VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGNTPANDGSVIRLVVPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRR6 (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 73/143 (51.05%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK I++A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIDRALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRP2 (Ribosome-recycling factor OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 73/143 (51.05%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK I++A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIDRALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACSS (Ribosome-recycling factor OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 73/145 (50.34%), Postives = 104/145 (71.72%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +N ++++++ VEYYG+   L  IA I  P++  LLI PYDK +L+ IEKA+ ++D+G++P NDG VIRL +PQLT ERRKE++K V K+AE  KV VRN RRDA+   +K +K  ++SED + DL   +Q LT+E  KKID+I K
Sbjct:   32 ANASLVNRVNVEYYGAMTPLNQIAAITIPEARVLLITPYDKGALEDIEKALYTADIGISPANDGSVIRLVIPQLTGERRKEIAKEVGKEAELAKVVVRNARRDAMDNLKKAEKASEISEDEMHDLEEQVQNLTNEATKKIDAISK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRGC (Ribosome-recycling factor OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=frr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.602e-36
Identity = 73/143 (51.05%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD+I VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+AI +SDLG+TP +DG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAKIAIRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PROM9 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9312) GN=frr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.602e-36
Identity = 73/142 (51.41%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            +N ++LD+I VEYYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D  S++QK+T++++  I++
Sbjct:   29 ANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITNKFIALIET 170          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_FINM2 (Ribosome-recycling factor OS=Finegoldia magna (strain ATCC 29328) GN=frr PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.623e-36
Identity = 73/143 (51.05%), Postives = 105/143 (73.43%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP++LD I VEYYG+   LK +A I+ P++  L IQP+DKS +K IEK I +S+LG+TP+NDG +IRL  PQLT +RRKEL+KVV +  E+ KV +R+IRRD +   +K++K  ++SED +  L  D+Q LTD+  K+ID+I
Sbjct:   32 ANPSILDNIMVEYYGTSTPLKQVATISAPEARLLTIQPWDKSIMKEIEKQIQASNLGITPSNDGTIIRLPFPQLTEDRRKELTKVVKEYGEKSKVTIRSIRRDFVDDAKKMEKNAEISEDELHVLLDDIQSLTDKLTKEIDNI 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRPN2.964e-3651.05Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_DEHSC2.964e-3648.95Ribosome-recycling factor OS=Dehalococcoides sp. (... [more]
RRF_DEHE12.964e-3648.95Ribosome-recycling factor OS=Dehalococcoides ethen... [more]
RRF_STRZP3.871e-3652.45Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRR63.871e-3651.05Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRP23.871e-3651.05Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_LACSS5.055e-3650.34Ribosome-recycling factor OS=Lactobacillus sakei s... [more]
RRF_STRGC6.602e-3651.05Ribosome-recycling factor OS=Streptococcus gordoni... [more]
RRF_PROM96.602e-3651.41Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_FINM28.623e-3651.05Ribosome-recycling factor OS=Finegoldia magna (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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