CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PROAC (Ribosome-recycling factor OS=Propionibacterium acnes GN=frr PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.245e-34
Identity = 67/145 (46.21%), Postives = 103/145 (71.03%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NPAM +K+ VEYYG+P  L+ +A    P++ ++LI P+DKS +  +EKAI  SDLG+ P+NDG V+R  LP LT ERRKE  K+   +AEEG++AVRN+RR +    +K +K+K++SED +  L  +L ++T +Y+++ID + K
Sbjct:   31 ANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTVLIAPFDKSCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGRIAVRNVRRASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLK 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VESOH (Ribosome-recycling factor OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=frr PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.124e-34
Identity = 68/141 (48.23%), Postives = 103/141 (73.05%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            ++P++L++I + YYGS V L  +A I+T DS +L   P++K  +  IEKAI++SDLG+ P   G+VIR+ LP LT ERR EL K++  +AE+ K+A+RNIRRDA   +++L KEK++S+D  +    D+QK+TDEY+KKI+
Sbjct:   32 AHPSLLEQIHINYYGSMVPLSQVANISTEDSRTLKASPWEKDMVSVIEKAIMTSDLGLNPQTIGQVIRIHLPPLTQERRGELVKIIKDEAEKAKIAIRNIRRDANSDFKELLKEKEISKDEARKAEYDIQKITDEYIKKIE 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEGPL (Ribosome-recycling factor OS=Legionella pneumophila (strain Lens) GN=frr PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.124e-34
Identity = 68/143 (47.55%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD + V+YYGSP  L  +A I T DS ++L+ P++KS + +IEKAI++SDLG+ P   G  IR+ +P LT ERRKEL KVV  + E+G+V++RNIRRDA    ++L KEK +SED+ +  +  +QKLTD Y+ ++D++
Sbjct:   32 ANASLLDHVMVDYYGSPTPLSQVANITTSDSRTILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEGPH (Ribosome-recycling factor OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=frr PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.124e-34
Identity = 68/143 (47.55%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD + V+YYGSP  L  +A I T DS ++L+ P++KS + +IEKAI++SDLG+ P   G  IR+ +P LT ERRKEL KVV  + E+G+V++RNIRRDA    ++L KEK +SED+ +  +  +QKLTD Y+ ++D++
Sbjct:   32 ANASLLDHVMVDYYGSPTPLSQVANITTSDSRTILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEGPC (Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.124e-34
Identity = 68/143 (47.55%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD + V+YYGSP  L  +A I T DS ++L+ P++KS + +IEKAI++SDLG+ P   G  IR+ +P LT ERRKEL KVV  + E+G+V++RNIRRDA    ++L KEK +SED+ +  +  +QKLTD Y+ ++D++
Sbjct:   32 ANASLLDHVMVDYYGSPTPLSQVANITTSDSRTILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEGPA (Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.124e-34
Identity = 68/143 (47.55%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD + V+YYGSP  L  +A I T DS ++L+ P++KS + +IEKAI++SDLG+ P   G  IR+ +P LT ERRKEL KVV  + E+G+V++RNIRRDA    ++L KEK +SED+ +  +  +QKLTD Y+ ++D++
Sbjct:   32 ANASLLDHVMVDYYGSPTPLSQVANITTSDSRTILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_KOSOT (Ribosome-recycling factor OS=Kosmotoga olearia (strain TBF 19.5.1) GN=frr PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.774e-34
Identity = 65/145 (44.83%), Postives = 112/145 (77.24%), Query Frame = -2
Query:  213 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 647
            +PA+L++I+V+YYG P  +  +A IN  +  SL+I+P++K+ L  IEKAI++S+LG+TP NDG V+RL  P  T+E+R++  K+  + AE+GK+AVRNIRRD LK  ++++K K+++ED+++    +LQKLTD+Y++++D ++++
Sbjct:   33 SPAILEEIKVDYYGVPTPINQLATINVSEDRSLIIRPWEKNMLSHIEKAILASNLGLTPINDGNVVRLNFPIPTTEQREKWVKLSKEIAEKGKIAVRNIRRDVLKEAKEMEKNKEMTEDDLRRFEEELQKLTDKYVEEMDKLFEK 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_GEOSL (Ribosome-recycling factor OS=Geobacter sulfurreducens GN=frr PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.774e-34
Identity = 64/143 (44.76%), Postives = 106/143 (74.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +LD+I V++YG+P  L  +A +  P+  ++ IQP++   +  IEKAI++++LG TP+NDG++IR++LP LT ERRKE+ K + K AE+ K+A+RNIRRDA+   +KL+K+KK+SED++K    ++Q +T+ Y+ K+D +
Sbjct:   32 ANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITIQPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIAIRNIRRDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PARD8 (Ribosome-recycling factor OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=frr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.623e-34
Identity = 66/144 (45.83%), Postives = 105/144 (72.92%), Query Frame = -2
Query:  219 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 650
            +NP +LD ++V YYG+PV L ++A +  PD+ +++I P++K  ++ IEK I+ S+LG+TP N+GEVIRL +P LT ERR++L K   ++AE  K++VRN RRDA++A +K  K   + ED  KD  +++QK+ D+++KKID +Y
Sbjct:   34 ANPKILDCVKVMYYGAPVPLTNVATVTVPDARTIMITPWEKKIIRDIEKGILDSELGITPENNGEVIRLGIPPLTEERRRQLVKQCKQEAENAKISVRNARRDAIEALKKSIKSDGVPEDVEKDAEAEVQKIHDKFIKKIDELY 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACPL (Ribosome-recycling factor OS=Lactobacillus plantarum GN=frr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.623e-34
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++L++I  +YYG+   L  +A I  P+   L++ P+DKS+LK IEKAI++SDLG++P NDG  IRL +PQLT ERRKEL+K V  + E  KVAVRN+RRDA++A +K  K+ + ++D +  L    QKLTD+  K +D+I
Sbjct:   34 ANASLLNRISADYYGAQTPLNQMAAITVPEPRVLMVTPFDKSALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERAKVAVRNVRRDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAI 176          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PROAC1.245e-3446.21Ribosome-recycling factor OS=Propionibacterium acn... [more]
RRF_VESOH2.124e-3448.23Ribosome-recycling factor OS=Vesicomyosocius okuta... [more]
RRF_LEGPL2.124e-3447.55Ribosome-recycling factor OS=Legionella pneumophil... [more]
RRF_LEGPH2.124e-3447.55Ribosome-recycling factor OS=Legionella pneumophil... [more]
RRF_LEGPC2.124e-3447.55Ribosome-recycling factor OS=Legionella pneumophil... [more]
RRF_LEGPA2.124e-3447.55Ribosome-recycling factor OS=Legionella pneumophil... [more]
RRF_KOSOT2.774e-3444.83Ribosome-recycling factor OS=Kosmotoga olearia (st... [more]
RRF_GEOSL2.774e-3444.76Ribosome-recycling factor OS=Geobacter sulfurreduc... [more]
RRF_PARD83.623e-3445.83Ribosome-recycling factor OS=Parabacteroides dista... [more]
RRF_LACPL3.623e-3448.25Ribosome-recycling factor OS=Lactobacillus plantar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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