CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRA3 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype III GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 73/143 (51.05%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD+I+VEYYG+P  L  +A I  P++  LLI P+DKSS+K IE+AI  SDLG+ P NDG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED++K L  D+QK TD+ +K ID +
Sbjct:   32 ANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRA1 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype Ia GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 73/143 (51.05%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD+I+VEYYG+P  L  +A I  P++  LLI P+DKSS+K IE+AI  SDLG+ P NDG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED++K L  D+QK TD+ +K ID +
Sbjct:   32 ANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PROMP (Ribosome-recycling factor OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 77/142 (54.23%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            +N ++LD+I VEYYG+   +KS+A I+T DS ++ IQP+D SSL++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +KE  +S+D  +D   ++QK TD+Y+  I++
Sbjct:   29 ANASLLDRISVEYYGAETPIKSLASISTIDSQTISIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISKDVSRDNQLEIQKFTDKYISLIET 170          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CLOBH (Ribosome-recycling factor OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 77/143 (53.85%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   32 ANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CLOB1 (Ribosome-recycling factor OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 77/143 (53.85%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   32 ANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACCN (Ribosome-recycling factor OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 71/145 (48.97%), Postives = 108/145 (74.48%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR+EL KVV K AE+ KVA+RN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASILDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYAEDAKVAIRNVRRDGNDELKKLEKAGEMTEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SYNPW (Ribosome-recycling factor OS=Synechococcus sp. (strain WH7803) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 73/141 (51.77%), Postives = 105/141 (74.47%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            +N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L  IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +KE + SED  +D    +QK  D+++ +++
Sbjct:   29 ANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKIKKQEKEGEFSEDQSRDAQDSVQKTLDKFIAEVE 169          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACLM (Ribosome-recycling factor OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 71/143 (49.65%), Postives = 106/143 (74.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD+++V YYG+P  L  +A I  P++  L++ P+DKS LK IEKA+  SDLG+TP NDG VIRL +P LT ERR+EL K + K  E  KVA+RNIRRDA+   +K +K K+++ED++KDL +++QK+TD+ +K+ D +
Sbjct:   32 ANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTPFDKSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACH4 (Ribosome-recycling factor OS=Lactobacillus helveticus (strain DPC 4571) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/143 (50.35%), Postives = 107/143 (74.83%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N A+LD ++VEYYG+P  L  ++ I  P+   LLI PYD++SL  IE A+++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K AE+ K+AVRN+RR+A+ A +K QK+  ++ED  ++L   +QK+TD+  KKID +
Sbjct:   32 ANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVLLITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAKIAVRNVRREAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CARHZ (Ribosome-recycling factor OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 75/145 (51.72%), Postives = 107/145 (73.79%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            + PA+L+K+ VEYYG+ + +  +A I+ P+   L+IQP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV  K+AEE +VA+RNIRRDA    + L+K+K +SED  K    ++QKLTD+++K +D + K
Sbjct:   32 ATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVAIRNIRRDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLK 176          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRA32.052e-3751.05Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_STRA12.052e-3751.05Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_PROMP2.052e-3754.23Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_CLOBH2.052e-3753.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CLOB12.052e-3753.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_BACCN2.052e-3748.97Ribosome-recycling factor OS=Bacillus cereus subsp... [more]
RRF_SYNPW2.681e-3751.77Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_LACLM2.681e-3749.65Ribosome-recycling factor OS=Lactococcus lactis su... [more]
RRF_LACH42.681e-3750.35Ribosome-recycling factor OS=Lactobacillus helveti... [more]
RRF_CARHZ2.681e-3751.72Ribosome-recycling factor OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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