CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CALS8 (Ribosome-recycling factor OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 71/143 (49.65%), Postives = 106/143 (74.13%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP +LDK+ V+YYG P  +  +A I  P++  ++IQP++   LK IEKAI  +DLG+ P NDG+VIRL  P+LT ERRKEL K V K AE+ KVA+RNIRR+A+  Y+K++K  +++ED++KD   D+QKL D+Y+++I+ +
Sbjct:   31 ANPHILDKVMVDYYGVPTPIPQLASITVPEARMIVIQPWEARMLKEIEKAIQKADLGVNPANDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREAIDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKL 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACHK (Ribosome-recycling factor OS=Bacillus thuringiensis subsp. konkukian GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACCZ (Ribosome-recycling factor OS=Bacillus cereus (strain ZK / E33L) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACC3 (Ribosome-recycling factor OS=Bacillus cereus (strain 03BB102) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACC2 (Ribosome-recycling factor OS=Bacillus cereus (strain G9842) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACC0 (Ribosome-recycling factor OS=Bacillus cereus (strain AH820) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACAN (Ribosome-recycling factor OS=Bacillus anthracis GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACAH (Ribosome-recycling factor OS=Bacillus thuringiensis (strain Al Hakam) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACAC (Ribosome-recycling factor OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACAA (Ribosome-recycling factor OS=Bacillus anthracis (strain A0248) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = -2 
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CALS82.681e-3749.65Ribosome-recycling factor OS=Caldicellulosiruptor ... [more]
RRF_BACHK2.681e-3749.66Ribosome-recycling factor OS=Bacillus thuringiensi... [more]
RRF_BACCZ2.681e-3749.66Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC32.681e-3749.66Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC22.681e-3749.66Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC02.681e-3749.66Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACAN2.681e-3749.66Ribosome-recycling factor OS=Bacillus anthracis GN... [more]
RRF_BACAH2.681e-3749.66Ribosome-recycling factor OS=Bacillus thuringiensi... [more]
RRF_BACAC2.681e-3749.66Ribosome-recycling factor OS=Bacillus anthracis (s... [more]
RRF_BACAA2.681e-3749.66Ribosome-recycling factor OS=Bacillus anthracis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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