CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PROMS (Ribosome-recycling factor OS=Prochlorococcus marinus (strain AS9601) GN=frr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 74/142 (52.11%), Postives = 109/142 (76.76%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            +N ++LD++ VEYYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D  S++QK+TD+Y+  I++
Sbjct:   29 ANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIET 170          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THETN (Ribosome-recycling factor OS=Thermoanaerobacter tengcongensis GN=frr PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 74/143 (51.75%), Postives = 105/143 (73.43%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPA+LD+I V YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL LP+LT ERRKEL K+V K+AEE ++AVR IRRDA    +K++K+ ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:   31 ANPALLDRITVNYYGTPTPLNRLATITAPEPRVLVVQPWDVSQIGEIEKAIQKSDLGINPVSDGKVLRLVLPELTEERRKELVKLVHKKAEEARIAVRQIRRDANDLVKKMEKDGEISEDERKRREEEIQKLTDKYIKEIDKM 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SYNS9 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9902) GN=frr PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 72/141 (51.06%), Postives = 105/141 (74.47%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            +N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S L +IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +K+   SED  +D    +QK+ D+++ +++
Sbjct:   29 ANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQIQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASKYAEEGKVALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSVQKVLDKFIVELE 169          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SYNPX (Ribosome-recycling factor OS=Synechococcus sp. (strain WH8102) GN=frr PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 72/141 (51.06%), Postives = 105/141 (74.47%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            +N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +K+   SED  +D    +QK  D+++ +++
Sbjct:   29 ANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDAVQKTLDKFIAELE 169          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PROM5 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9515) GN=frr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 76/142 (53.52%), Postives = 106/142 (74.65%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            +N ++LD+I VEYYG+   +KS+A I T DS ++ IQP+D S L++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +KE  +S D  +D   ++QK TD+Y+  I++
Sbjct:   29 ANASLLDRISVEYYGAETPIKSLASIATVDSQTISIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISIDESRDNQLEIQKFTDKYISLIET 170          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRZT (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=frr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.737e-36
Identity = 74/143 (51.75%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRZJ (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain JJA) GN=frr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.737e-36
Identity = 74/143 (51.75%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRPJ (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=frr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.737e-36
Identity = 74/143 (51.75%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRPI (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=frr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.737e-36
Identity = 74/143 (51.75%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRP7 (Ribosome-recycling factor OS=Streptococcus pneumoniae (strain 70585) GN=frr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.737e-36
Identity = 74/143 (51.75%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG    L  IA I  P++  LL+ P+DKSSLK IE+A+ +SDLG+TP NDG VIRL +P LT E R++L+K V K  E  KVAVRNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDEAKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDM 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PROMS7.799e-3752.11Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_THETN1.019e-3651.75Ribosome-recycling factor OS=Thermoanaerobacter te... [more]
RRF_SYNS91.019e-3651.06Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNPX1.019e-3651.06Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_PROM51.330e-3653.52Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_STRZT1.737e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRZJ1.737e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRPJ1.737e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRPI1.737e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]
RRF_STRP71.737e-3651.75Ribosome-recycling factor OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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