Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_CLOP1 (Ribosome-recycling factor OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=frr PE=3 SV=1)
HSP 1 Score: 148.673 bits (374), Expect = 2.509e-35
Identity = 71/143 (49.65%), Postives = 103/143 (72.03%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
+NP MLD+I+VEYYGS L +A +++P+ L+I P++K LK IEKAI+ SDLG+ PNNDG +IRL +P+LT E RK L K V K E+ KVA+R+IR+DA + +KE ++ED +K D+QK+TD+++K+ID+I
Sbjct: 32 ANPTMLDRIQVEYYGSMCPLNQVANVSSPEPRLLVITPWEKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAKVAIRSIRKDANDKVKNFKKEGTITEDEMKKGEDDIQKVTDKFVKEIDTI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_SYNAS (Ribosome-recycling factor OS=Syntrophus aciditrophicus (strain SB) GN=frr PE=3 SV=1)
HSP 1 Score: 148.288 bits (373), Expect = 3.277e-35
Identity = 70/143 (48.95%), Postives = 101/143 (70.63%), Query Frame = -2
Query: 213 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 641
++LD I+ +YYG+P L +A ++ P+S +LI P+D S+L +IEKAI SDLG+ PNNDG+VIR+++P LT RRKEL KVV K AEE KV +RN RRDA + ++ ++K +SED + D +QK+TD Y++K + I Q
Sbjct: 35 SLLDGIKADYYGTPTPLNQVATLSVPESRQILISPWDTSALNAIEKAIQKSDLGLVPNNDGKVIRISIPPLTEARRKELVKVVRKMAEECKVKLRNARRDANEEFKSMKKNNDISEDQMHDYQDQVQKMTDSYIEKSEDILVQ 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_MOOTA (Ribosome-recycling factor OS=Moorella thermoacetica (strain ATCC 39073) GN=frr PE=3 SV=1)
HSP 1 Score: 148.288 bits (373), Expect = 3.277e-35
Identity = 72/143 (50.35%), Postives = 103/143 (72.03%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
+NPA+L+K+ V YYG+P + +A +++P++ L+IQP+D++ L IEKAI+ SDLG+TP++DG VIR+T+PQLT ERR EL KV K+AEE +V VRN RR+A + +K K+ SED VK +QK TD Y++ ID I
Sbjct: 32 ANPALLEKVLVSYYGTPTPVNQLATVSSPEARLLVIQPWDRNILPEIEKAILKSDLGLTPSSDGTVIRITIPQLTEERRSELVKVARKKAEEFRVMVRNARREANDKLKASEKNKEASEDEVKRAQEKVQKTTDNYIQIIDKI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_THET8 (Ribosome-recycling factor OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=frr PE=1 SV=1)
HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
+NPA+L ++VEYYG+ V L IA + PD +L++Q +D+++LK+IEKAI SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG+VA+RNIRR+AL +KL KE LSED K +++QK+TDE++ K D +
Sbjct: 33 ANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_THET2 (Ribosome-recycling factor OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=frr PE=3 SV=1)
HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
+NPA+L ++VEYYG+ V L IA + PD +L++Q +D+++LK+IEKAI SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG+VA+RNIRR+AL +KL KE LSED K +++QK+TDE++ K D +
Sbjct: 33 ANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_DESDG (Ribosome-recycling factor OS=Desulfovibrio desulfuricans (strain G20) GN=frr PE=3 SV=1)
HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 66/143 (46.15%), Postives = 106/143 (74.13%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
++ +++D I+V+YYG+P + +A + PDS ++ IQP+D+ + +EKAI+ SDLG+TP NDG++IR+++P LT ERRKEL KV K E+ KVAVRNIRRDA + +K++K+K ++ED++K ++QKLTD ++ K + +
Sbjct: 31 ASTSLVDSIKVDYYGTPTPINQLASVAVPDSRTITIQPWDRGAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTEDAKVAVRNIRRDANEQIKKMEKDKAITEDDMKRGQDEVQKLTDAFVAKSEKV 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_SHEAM (Ribosome-recycling factor OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=frr PE=3 SV=1)
HSP 1 Score: 147.132 bits (370), Expect = 7.300e-35
Identity = 66/143 (46.15%), Postives = 108/143 (75.52%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
++P++LD I+V YYGS LK + + DS +L + +D+S+++++EKAI+SSDLG+ P + G IR+ LP LT ERR++L KVV +AE+G+VA+RN+RRDA ++++L+KEK+ +ED+V+ ++QK+TD ++KKID +
Sbjct: 32 AHPSLLDTIQVNYYGSMTPLKQVGNVTIEDSRTLAVNVFDRSAIQAVEKAIMSSDLGLNPMSAGATIRIPLPPLTEERRRDLVKVVRAEAEQGRVAIRNVRRDANSSFKQLEKEKECTEDDVRRSEEEVQKITDLHIKKIDEL 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_FUSNN (Ribosome-recycling factor OS=Fusobacterium nucleatum subsp. nucleatum GN=frr PE=3 SV=1)
HSP 1 Score: 147.132 bits (370), Expect = 7.300e-35
Identity = 71/145 (48.97%), Postives = 108/145 (74.48%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKK--LSEDNVKDLSSDLQKLTDEYMKKIDSI 650
+N +MLD I+VE YGS V L I ++ P++ L+I P+DK+ + IEKAI+++++GMTPNNDG VIRL LP+LT++RRKE K+ +AE GK+A+RNIR+D +KL+K+K+ +SED +K +++Q LTD+Y+K+ID +
Sbjct: 35 ANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLLVIDPWDKTLISKIEKAILAANIGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKIAIRNIRKDINNHLKKLEKDKENPISEDELKKEETNVQTLTDKYVKEIDDL 179
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_LEUCK (Ribosome-recycling factor OS=Leuconostoc citreum (strain KM20) GN=frr PE=3 SV=1)
HSP 1 Score: 146.747 bits (369), Expect = 9.534e-35
Identity = 70/143 (48.95%), Postives = 107/143 (74.83%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
+NP +LD+IEVEYYG+ L +A I+ P++ LLI P+DK++L+ I +AI SDLG+ P++DG ++RL +PQ+T E RK+L+K V +AE+ KV+VRN+RRDA+ + ++KEK++ ED+V+ +D+QKLTD +K ID I
Sbjct: 31 ANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVSVRNVRRDAM---DSVKKEKEMPEDDVRKAENDIQKLTDNNIKAIDDI 170
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_SYNFM (Ribosome-recycling factor OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=frr PE=3 SV=1)
HSP 1 Score: 146.362 bits (368), Expect = 1.245e-34
Identity = 68/141 (48.23%), Postives = 104/141 (73.76%), Query Frame = -2
Query: 219 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 641
+++D I EYYG+P +L +A I P+ +++IQP+D S + IEK+I+ S+LG+TP +DG+VIR+ +P LT++RR+EL KVV K +EE KVAVRNIRRD + + L+KEK++SED + Q++TD+++KKID +Y
Sbjct: 35 SLVDGIRAEYYGTPTALNQLATITIPEPRTIMIQPWDTSVIGEIEKSILKSELGLTPMSDGKVIRINIPVLTADRRRELVKVVKKMSEESKVAVRNIRRDVNEMIKDLKKEKEISEDEQFKAQEETQRITDDFIKKIDVVY 175
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 500
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 2.51e-35 / Id = 49.65 Expect = 3.28e-35 / Id = 48.95 Expect = 3.28e-35 / Id = 50.35 Expect = 4.28e-35 / Id = 48.95 Expect = 4.28e-35 / Id = 48.95 Expect = 4.28e-35 / Id = 46.15 Expect = 7.30e-35 / Id = 46.15 Expect = 7.30e-35 / Id = 48.97 Expect = 9.53e-35 / Id = 48.95 Expect = 1.25e-34 / Id = 48.23 Sequence RRF_CLOP1 RRF_SYNAS RRF_MOOTA RRF_THET8 RRF_THET2 RRF_DESDG RRF_SHEAM RRF_FUSNN RRF_LEUCK RRF_SYNFM
Match Name E-value Identity Description
RRF_CLOP1 2.509e-35 49.65 Ribosome-recycling factor OS=Clostridium perfringe... [more]
RRF_SYNAS 3.277e-35 48.95 Ribosome-recycling factor OS=Syntrophus aciditroph... [more]
RRF_MOOTA 3.277e-35 50.35 Ribosome-recycling factor OS=Moorella thermoacetic... [more]
RRF_THET8 4.280e-35 48.95 Ribosome-recycling factor OS=Thermus thermophilus ... [more]
RRF_THET2 4.280e-35 48.95 Ribosome-recycling factor OS=Thermus thermophilus ... [more]
RRF_DESDG 4.280e-35 46.15 Ribosome-recycling factor OS=Desulfovibrio desulfu... [more]
RRF_SHEAM 7.300e-35 46.15 Ribosome-recycling factor OS=Shewanella amazonensi... [more]
RRF_FUSNN 7.300e-35 48.97 Ribosome-recycling factor OS=Fusobacterium nucleat... [more]
RRF_LEUCK 9.534e-35 48.95 Ribosome-recycling factor OS=Leuconostoc citreum (... [more]
RRF_SYNFM 1.245e-34 48.23 Ribosome-recycling factor OS=Syntrophobacter fumar... [more]
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