CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CLOTH (Ribosome-recycling factor OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=frr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.623e-34
Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N A+LD+I V+YYG P  +  +  I+ P+   ++IQP+D   LK IEK I  SD+G+ PNNDG+VIRL  P LT ERRKEL+K+  K  E+ KVA+R+IRRD ++  + ++K  +++ED++K    D+Q LTD+Y+ +ID +
Sbjct:   30 ANAAILDRITVDYYGVPTPINQLGTISVPEPRVIVIQPWDAQILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDAKVAIRSIRRDGIEKKKAMKKNGEITEDDLKSAEKDIQNLTDKYIAEIDKL 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CLOB8 (Ribosome-recycling factor OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=frr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.623e-34
Identity = 72/143 (50.35%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP MLD+I VEYYGS   L  +A ++ P+   L+I P++K  LK IEKAI+ SDLG+ P++DG +IRL +P+LT E RK L K V K  EE KVA+R+IR+ A    + L+K++ LSED VK    ++QK TD  +K+IDSI
Sbjct:   32 ANPTMLDRIHVEYYGSMCPLSQVANVSAPEPRVLMITPWEKPLLKEIEKAILKSDLGLNPSSDGSIIRLVIPELTEETRKTLVKNVKKTGEEAKVAIRSIRKTANDKIKALKKDEDLSEDQVKKAEDEVQKKTDAVVKEIDSI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHESW (Ribosome-recycling factor OS=Shewanella sp. (strain W3-18-1) GN=frr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.732e-34
Identity = 65/143 (45.45%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    D+QK TD ++KK+D I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDDVQKFTDAHIKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEPC (Ribosome-recycling factor OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=frr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.732e-34
Identity = 65/143 (45.45%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    D+QK TD ++KK+D I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDDVQKFTDAHIKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_OCEIH (Ribosome-recycling factor OS=Oceanobacillus iheyensis GN=frr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.732e-34
Identity = 66/145 (45.52%), Postives = 101/145 (69.66%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP++LD + V+YYG+   L  +A +  P++  L I PYDKS++  IEKAI  +DLG++P++DG +IR+ +P LT ERRK+L KVV K +EE KV +RNIRRD     +K++K   L+ED+++    D+Q  T++Y+ KID + K
Sbjct:   32 ANPSILDSVFVDYYGASTPLNQLASVGAPEARLLTITPYDKSAIGDIEKAIQKADLGLSPSSDGNIIRINIPALTQERRKDLVKVVGKYSEEAKVQIRNIRRDTNDQLKKMEKNGDLTEDDLRGFQDDVQTSTNDYINKIDQLAK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DESAA (Ribosome-recycling factor OS=Desulfatibacillum alkenivorans (strain AK-01) GN=frr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.732e-34
Identity = 65/143 (45.45%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  213 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 641
            +MLD ++++YYG+P  +   A +  P+S  + IQP+D S +K IEKAI+ SDLG+ P+NDG++IR+ +P LT +RRKE+ K+V K +EEGK++VRNIRRDA +  + ++K+  ++ED       ++QK+TD+++KK+D I  Q
Sbjct:   35 SMLDGVKLDYYGTPTPINQAATVAIPESRLITIQPWDASVIKDIEKAILKSDLGLNPSNDGKIIRIAIPPLTEDRRKEMVKLVNKMSEEGKISVRNIRRDANETIKSMKKDGDIAEDLAFKGQDEVQKITDDFVKKVDDICAQ 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORJK (Ribosome-recycling factor OS=Corynebacterium jeikeium (strain K411) GN=frr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.732e-34
Identity = 64/143 (44.76%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP+M + +  EYYG P  +  +A I+ P+   LLI+PY++S++ +IE AI +SDLG+ P NDG+V+R+T+PQLT ERRKE+ KV   + E+ K+A+RNIRR  ++   K+QK+ +  ED V+    DL+K+T  Y++++DS+
Sbjct:   32 ANPSMFNGVVAEYYGVPTPITQMATISVPEPRMLLIKPYEQSTMDAIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKEMVKVAKSKGEDAKIAIRNIRRKGMEQLGKIQKDGEAGEDEVRAAEKDLEKITHSYVEQVDSL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ACIC1 (Ribosome-recycling factor OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=frr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.732e-34
Identity = 69/145 (47.59%), Postives = 99/145 (68.28%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NPA+  KI VEYYG+P  L  +A     D+  ++I PYDK SL++IEKAI  SDLG+ P +DG VIR+ +P LT ERR++  K+   +AEE +VA+RNIRR A  A +KLQK+ ++ ED+V+    +L +LT +Y+  ID + K
Sbjct:   32 ANPALFSKITVEYYGTPTPLNQLASFTVADARLIVIHPYDKGSLRAIEKAIRDSDLGVNPTDDGSVIRVAIPPLTEERRRDYIKMARHEAEEARVAIRNIRRHAKDALDKLQKDGEVGEDDVRRAEKELDELTHKYVAHIDEMLK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PORG3 (Ribosome-recycling factor OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=frr PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.180e-34
Identity = 69/146 (47.26%), Postives = 102/146 (69.86%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++P +LD I V YYG+   L  +A INTPD+ ++++ P+++S +K IEKAI+ S LG+TP N+GE+IRL LP LT ERR++L K +   AE+ KV+VRN RRDA+ A +K  K     ED  KD  +++QK+ D Y+KKID ++ +
Sbjct:   33 ASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWERSLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQIKGDAEDAKVSVRNARRDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAE 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PASMU (Ribosome-recycling factor OS=Pasteurella multocida GN=frr PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 64/143 (44.76%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++LD I+VEYYGSP  L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  +AE+GK+AVRN+RRDA    + L K+K++SED  +    ++QK+TD ++KK+D +
Sbjct:   32 AQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEAEQGKIAVRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEV 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CLOTH3.623e-3446.15Ribosome-recycling factor OS=Clostridium thermocel... [more]
RRF_CLOB83.623e-3450.35Ribosome-recycling factor OS=Clostridium beijerinc... [more]
RRF_SHESW4.732e-3445.45Ribosome-recycling factor OS=Shewanella sp. (strai... [more]
RRF_SHEPC4.732e-3445.45Ribosome-recycling factor OS=Shewanella putrefacie... [more]
RRF_OCEIH4.732e-3445.52Ribosome-recycling factor OS=Oceanobacillus iheyen... [more]
RRF_DESAA4.732e-3445.45Ribosome-recycling factor OS=Desulfatibacillum alk... [more]
RRF_CORJK4.732e-3444.76Ribosome-recycling factor OS=Corynebacterium jeike... [more]
RRF_ACIC14.732e-3447.59Ribosome-recycling factor OS=Acidothermus cellulol... [more]
RRF_PORG36.180e-3447.26Ribosome-recycling factor OS=Porphyromonas gingiva... [more]
RRF_PASMU8.071e-3444.76Ribosome-recycling factor OS=Pasteurella multocida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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