CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THEP1 (Ribosome-recycling factor OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=frr PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.054e-33 Identity = 68/144 (47.22%), Postives = 105/144 (72.92%), Query Frame = -2 Query: 216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647 +PA+L++I+V+YYG P + +A I+ + +L+I+P+DKS L IEKAI +SDLG+ P NDG VIRL P T+E+R++ K + EEGK+A+RNIRRD LK ++ QKE K+ ED+ K L +++QKLTDE+++ +D +++ Sbjct: 33 SPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRRDILKKIKEDQKEGKIPEDDAKRLENEIQKLTDEFIENLDKVFE 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PORGI (Ribosome-recycling factor OS=Porphyromonas gingivalis GN=frr PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33 Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 ++P +LD I V YYG+ L +A INTPD+ ++++ P+++S +K IEKAI+ S LG+TP N+GE+IRL LP LT ERR++L K AE+ KV+VRN RRDA+ A +K K ED KD +++QK+ D Y+KKID ++ + Sbjct: 33 ASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWERSLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAKVSVRNARRDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAE 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_OENOB (Ribosome-recycling factor OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=frr PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33 Identity = 74/143 (51.75%), Postives = 98/143 (68.53%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP +L+KI+VEYYG+P L +A + P++ LLI PYDK+SLK+IE+AI +SDLG+TP NDG IRL +PQLT + RKEL K V +AE+ KVA RN R D + L+K+ LSED+ D+QK TD +K ID I Sbjct: 30 ANPNILNKIQVEYYGAPTPLNQLASVQIPEARVLLITPYDKTSLKAIEQAIFASDLGLTPQNDGSAIRLIIPQLTEDSRKELVKQVKAEAEKAKVAARNTRHDFM---SDLKKDNDLSEDSRHRTEDDIQKATDLEIKDIDRI 169
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_IDILO (Ribosome-recycling factor OS=Idiomarina loihiensis GN=frr PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33 Identity = 68/145 (46.90%), Postives = 104/145 (71.72%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 ++P++LD + V YYG+ LK +A I T DS +L + +DKS+ ++EKAI++SDLG+ P + G VIR+ LP LT ERR++L K+V +AE G++AVRNIRRDA + L KEK+++ED ++ ++QKLTD+++K+ID K Sbjct: 32 AHPSILDSVMVNYYGTDTPLKQLANITTEDSRTLALTVFDKSASAAVEKAIINSDLGLNPASAGAVIRIPLPPLTEERRRDLVKIVRAEAENGRIAVRNIRRDANGDIKDLLKEKEITEDEERNAEEEIQKLTDKFVKQIDEALK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HALOH (Ribosome-recycling factor OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=frr PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33 Identity = 65/143 (45.45%), Postives = 107/143 (74.83%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 + P++++ I V+YYG+ ++ +A++ P++ L+I+P+DKS ++SIEKAI+ S+LG+ P+NDG VIR+ +PQLT ERRKEL KV ++AE+G++A+RNIRR+A ++++K ++SEDN +Q+LTD Y+ KID + Sbjct: 32 ARPSLVENIMVDYYGTQTPIQQMAKVVAPEARQLVIEPWDKSVIESIEKAILKSNLGLNPSNDGNVIRINIPQLTEERRKELVKVAHEKAEKGRIAIRNIRREANDELKEMEKNSEISEDNYHRGLDMIQELTDTYIDKIDKM 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DESMR (Ribosome-recycling factor OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=frr PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33 Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 213 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 641 ++LD + V+YYG+ L +A + TPDS ++ IQP+D+ + IEKAI+ S LG+TP NDG++IR+++P LT +RRK+L KV K EE KVA+RN+RRDA + +K + +K +SED+ + D+QKLTD Y+ K D + + Sbjct: 34 SLLDGVRVDYYGTATQLDQLASVATPDSRTITIQPWDRKAFADIEKAILKSGLGLTPVNDGKIIRISIPPLTEDRRKDLVKVAKKYVEEAKVAMRNVRRDANELLKKKKNDKAISEDDQRKGQDDVQKLTDNYIVKTDEAFSK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAS1 (Ribosome-recycling factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=frr PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33 Identity = 66/146 (45.21%), Postives = 109/146 (74.66%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 +N +L+ + V+YYG+P ++ +A I+ P++ L+I PYDKSS+ +IEKAI +++LG+ P++DGEVIR+++P LT ERRKEL K V K E+ KVAVRN+RRD+ +K QK ++ED+++ + D+QKLTD+ +K+++ + ++ Sbjct: 31 ANSNLLNGVNVDYYGAPTPVQQLASISVPEARLLVISPYDKSSVGNIEKAINAANLGVNPSSDGEVIRISVPALTEERRKELVKDVKKIGEDAKVAVRNVRRDSNDELKKQQKNSDITEDDLRTQTDDVQKLTDDSIKEVEKLLEE 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEPA (Ribosome-recycling factor OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=frr PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33 Identity = 67/143 (46.85%), Postives = 104/143 (72.73%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I+V YYGS LK +A ++ D+ +L + +D++ + ++EKAI+SSDLG+ P + G IR+ LP LT ERRK+L KVV +AE G++A+RN+RRDA ++L+KEK+ +ED+V+ D+QKLTD ++K ID I Sbjct: 32 AHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLTVSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAIRNVRRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLIDEI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHELP (Ribosome-recycling factor OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=frr PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33 Identity = 67/143 (46.85%), Postives = 102/143 (71.33%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I+V YYG+P LK + ++ DS +L I +D + + ++EKAI+SSDLG+ P + G IR+ LP LT ERRK+L KVV +AE G++AVRN+RRDA + L+KEK+ +ED+V+ ++QK TD ++K+ID I Sbjct: 32 AHPSLLDSIKVPYYGTPTPLKQVGNVSIEDSRTLAITVFDTTMIAAVEKAIMSSDLGLNPMSAGTTIRIPLPALTEERRKDLIKVVRAEAENGRIAVRNVRRDANSDVKALEKEKECTEDDVRRTEDEIQKFTDAHIKQIDEI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEB5 (Ribosome-recycling factor OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=frr PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33 Identity = 64/143 (44.76%), Postives = 102/143 (71.33%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I+V YYG+ L +A + DS +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE G++A+RN+RRDA+ +KL+K K +ED+V+ ++QK TD ++KKID I Sbjct: 32 AHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKIDEI 174 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |