CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THEP1 (Ribosome-recycling factor OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=frr PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.054e-33
Identity = 68/144 (47.22%), Postives = 105/144 (72.92%), Query Frame = -2
Query:  216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647
            +PA+L++I+V+YYG P  +  +A I+  +  +L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEGK+A+RNIRRD LK  ++ QKE K+ ED+ K L +++QKLTDE+++ +D +++
Sbjct:   33 SPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRRDILKKIKEDQKEGKIPEDDAKRLENEIQKLTDEFIENLDKVFE 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PORGI (Ribosome-recycling factor OS=Porphyromonas gingivalis GN=frr PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33
Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++P +LD I V YYG+   L  +A INTPD+ ++++ P+++S +K IEKAI+ S LG+TP N+GE+IRL LP LT ERR++L K     AE+ KV+VRN RRDA+ A +K  K     ED  KD  +++QK+ D Y+KKID ++ +
Sbjct:   33 ASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWERSLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAKVSVRNARRDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAE 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_OENOB (Ribosome-recycling factor OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=frr PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33
Identity = 74/143 (51.75%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP +L+KI+VEYYG+P  L  +A +  P++  LLI PYDK+SLK+IE+AI +SDLG+TP NDG  IRL +PQLT + RKEL K V  +AE+ KVA RN R D +     L+K+  LSED+      D+QK TD  +K ID I
Sbjct:   30 ANPNILNKIQVEYYGAPTPLNQLASVQIPEARVLLITPYDKTSLKAIEQAIFASDLGLTPQNDGSAIRLIIPQLTEDSRKELVKQVKAEAEKAKVAARNTRHDFM---SDLKKDNDLSEDSRHRTEDDIQKATDLEIKDIDRI 169          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_IDILO (Ribosome-recycling factor OS=Idiomarina loihiensis GN=frr PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33
Identity = 68/145 (46.90%), Postives = 104/145 (71.72%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++P++LD + V YYG+   LK +A I T DS +L +  +DKS+  ++EKAI++SDLG+ P + G VIR+ LP LT ERR++L K+V  +AE G++AVRNIRRDA    + L KEK+++ED  ++   ++QKLTD+++K+ID   K
Sbjct:   32 AHPSILDSVMVNYYGTDTPLKQLANITTEDSRTLALTVFDKSASAAVEKAIINSDLGLNPASAGAVIRIPLPPLTEERRRDLVKIVRAEAENGRIAVRNIRRDANGDIKDLLKEKEITEDEERNAEEEIQKLTDKFVKQIDEALK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HALOH (Ribosome-recycling factor OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=frr PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33
Identity = 65/143 (45.45%), Postives = 107/143 (74.83%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++++ I V+YYG+   ++ +A++  P++  L+I+P+DKS ++SIEKAI+ S+LG+ P+NDG VIR+ +PQLT ERRKEL KV  ++AE+G++A+RNIRR+A    ++++K  ++SEDN       +Q+LTD Y+ KID +
Sbjct:   32 ARPSLVENIMVDYYGTQTPIQQMAKVVAPEARQLVIEPWDKSVIESIEKAILKSNLGLNPSNDGNVIRINIPQLTEERRKELVKVAHEKAEKGRIAIRNIRREANDELKEMEKNSEISEDNYHRGLDMIQELTDTYIDKIDKM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DESMR (Ribosome-recycling factor OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=frr PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33
Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  213 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 641
            ++LD + V+YYG+   L  +A + TPDS ++ IQP+D+ +   IEKAI+ S LG+TP NDG++IR+++P LT +RRK+L KV  K  EE KVA+RN+RRDA +  +K + +K +SED+ +    D+QKLTD Y+ K D  + +
Sbjct:   34 SLLDGVRVDYYGTATQLDQLASVATPDSRTITIQPWDRKAFADIEKAILKSGLGLTPVNDGKIIRISIPPLTEDRRKDLVKVAKKYVEEAKVAMRNVRRDANELLKKKKNDKAISEDDQRKGQDDVQKLTDNYIVKTDEAFSK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAS1 (Ribosome-recycling factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 66/146 (45.21%), Postives = 109/146 (74.66%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +N  +L+ + V+YYG+P  ++ +A I+ P++  L+I PYDKSS+ +IEKAI +++LG+ P++DGEVIR+++P LT ERRKEL K V K  E+ KVAVRN+RRD+    +K QK   ++ED+++  + D+QKLTD+ +K+++ + ++
Sbjct:   31 ANSNLLNGVNVDYYGAPTPVQQLASISVPEARLLVISPYDKSSVGNIEKAINAANLGVNPSSDGEVIRISVPALTEERRKELVKDVKKIGEDAKVAVRNVRRDSNDELKKQQKNSDITEDDLRTQTDDVQKLTDDSIKEVEKLLEE 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEPA (Ribosome-recycling factor OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 67/143 (46.85%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYGS   LK +A ++  D+ +L +  +D++ + ++EKAI+SSDLG+ P + G  IR+ LP LT ERRK+L KVV  +AE G++A+RN+RRDA    ++L+KEK+ +ED+V+    D+QKLTD ++K ID I
Sbjct:   32 AHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLTVSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAIRNVRRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLIDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHELP (Ribosome-recycling factor OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 67/143 (46.85%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+P  LK +  ++  DS +L I  +D + + ++EKAI+SSDLG+ P + G  IR+ LP LT ERRK+L KVV  +AE G++AVRN+RRDA    + L+KEK+ +ED+V+    ++QK TD ++K+ID I
Sbjct:   32 AHPSLLDSIKVPYYGTPTPLKQVGNVSIEDSRTLAITVFDTTMIAAVEKAIMSSDLGLNPMSAGTTIRIPLPALTEERRKDLIKVVRAEAENGRIAVRNVRRDANSDVKALEKEKECTEDDVRRTEDEIQKFTDAHIKQIDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEB5 (Ribosome-recycling factor OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 64/143 (44.76%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G++A+RN+RRDA+   +KL+K K  +ED+V+    ++QK TD ++KKID I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKIDEI 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_THEP11.054e-3347.22Ribosome-recycling factor OS=Thermotoga petrophila... [more]
RRF_PORGI1.377e-3347.26Ribosome-recycling factor OS=Porphyromonas gingiva... [more]
RRF_OENOB1.377e-3351.75Ribosome-recycling factor OS=Oenococcus oeni (stra... [more]
RRF_IDILO1.377e-3346.90Ribosome-recycling factor OS=Idiomarina loihiensis... [more]
RRF_HALOH1.377e-3345.45Ribosome-recycling factor OS=Halothermothrix oreni... [more]
RRF_DESMR1.377e-3346.15Ribosome-recycling factor OS=Desulfovibrio magneti... [more]
RRF_STAS11.798e-3345.21Ribosome-recycling factor OS=Staphylococcus saprop... [more]
RRF_SHEPA1.798e-3346.85Ribosome-recycling factor OS=Shewanella pealeana (... [more]
RRF_SHELP1.798e-3346.85Ribosome-recycling factor OS=Shewanella loihica (s... [more]
RRF_SHEB51.798e-3344.76Ribosome-recycling factor OS=Shewanella baltica (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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