CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEB2 (Ribosome-recycling factor OS=Shewanella baltica (strain OS223) GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 64/143 (44.76%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G++A+RN+RRDA+   +KL+K K  +ED+V+    ++QK TD ++KKID I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKIDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PSEA6 (Ribosome-recycling factor OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 71/143 (49.65%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I V YYG+P  LK +A +   DS +L +  +DKS+ +++EKAI+ SDLG+ P + G VIR+ +P LT ERRK+L +VV  +AE G+VAVRNIRRDA    ++L KEK++SED+       +QKLTDE++K+ID I
Sbjct:   32 AHPSLLDSIMVPYYGAPTPLKQLANVIAEDSRTLALTVFDKSAAQAVEKAIMQSDLGLNPMSAGTVIRIPMPALTEERRKDLIRVVRNEAEGGRVAVRNIRRDANGDIKELLKEKEISEDDAHRGEDAIQKLTDEFVKQIDDI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HAEPS (Ribosome-recycling factor OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 65/143 (45.45%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++LD I+VEYYGS   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GKV++RNIRRDA    + L+KEK++SE++ +    D+QK+TD Y+KK+D I
Sbjct:   32 AQPSLLDAIQVEYYGSATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVSIRNIRRDANDKIKTLEKEKQISENDERKAQDDIQKITDIYIKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORPE (Ribosome-recycling factor OS=Bordetella pertussis GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++  +LD ++VEYYGSPV +  +A +N  D+ ++ +QPY+KS    IEKAI  SDLG+ P + GE IR+ +P LT ERR++L+KVV  + E+ KVAVRN+RR+A +A +KL K+K++SED+ +    D+QKLTD  +  ID +  Q
Sbjct:   33 AHTGILDHVQVEYYGSPVPISQVANVNLVDARTISVQPYEKSMAGPIEKAIRESDLGLNPVSMGETIRVPMPALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDDVQKLTDRAVGDIDKMIVQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORPA (Ribosome-recycling factor OS=Bordetella parapertussis GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++  +LD ++VEYYGSPV +  +A +N  D+ ++ +QPY+KS    IEKAI  SDLG+ P + GE IR+ +P LT ERR++L+KVV  + E+ KVAVRN+RR+A +A +KL K+K++SED+ +    D+QKLTD  +  ID +  Q
Sbjct:   33 AHTGILDHVQVEYYGSPVPISQVANVNLVDARTISVQPYEKSMAGPIEKAIRESDLGLNPVSMGETIRVPMPALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDDVQKLTDRAVGDIDKMIVQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORBR (Ribosome-recycling factor OS=Bordetella bronchiseptica GN=frr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++  +LD ++VEYYGSPV +  +A +N  D+ ++ +QPY+KS    IEKAI  SDLG+ P + GE IR+ +P LT ERR++L+KVV  + E+ KVAVRN+RR+A +A +KL K+K++SED+ +    D+QKLTD  +  ID +  Q
Sbjct:   33 AHTGILDHVQVEYYGSPVPISQVANVNLVDARTISVQPYEKSMAGPIEKAIRESDLGLNPVSMGETIRVPMPALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDDVQKLTDRAVGDIDKMIVQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEB9 (Ribosome-recycling factor OS=Shewanella baltica (strain OS195) GN=frr PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 63/143 (44.06%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G++A+RN+RRDA+   +KL+K K  +ED+V+    ++QK TD ++KK+D I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEB8 (Ribosome-recycling factor OS=Shewanella baltica (strain OS185) GN=frr PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 63/143 (44.06%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G++A+RN+RRDA+   +KL+K K  +ED+V+    ++QK TD ++KK+D I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPBP (Ribosome-recycling factor OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=frr PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 70/146 (47.95%), Postives = 101/146 (69.18%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +NP M++ + V+YYG+   L  + +I  P+   +LI P++K  LK IEKAI ++ LG+TPNNDG  IR+ +P+LT ERRKEL+KVV ++AEE KVA+RNIRRDA    +K Q E  +S+D VK     +QK+TD Y+ K+  + K+
Sbjct:   32 ANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRVILITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQKAEEKKVAIRNIRRDANDELKKHQSE--MSQDEVKGHQDKIQKITDSYIAKLGDLEKE 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPBA (Ribosome-recycling factor OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=frr PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 70/146 (47.95%), Postives = 101/146 (69.18%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +NP M++ + V+YYG+   L  + +I  P+   +LI P++K  LK IEKAI ++ LG+TPNNDG  IR+ +P+LT ERRKEL+KVV ++AEE KVA+RNIRRDA    +K Q E  +S+D VK     +QK+TD Y+ K+  + K+
Sbjct:   32 ANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRVILITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQKAEEKKVAIRNIRRDANDELKKHQSE--MSQDEVKGHQDKIQKITDSYIAKLGDLEKE 175          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SHEB21.798e-3344.76Ribosome-recycling factor OS=Shewanella baltica (s... [more]
RRF_PSEA61.798e-3349.65Ribosome-recycling factor OS=Pseudoalteromonas atl... [more]
RRF_HAEPS1.798e-3345.45Ribosome-recycling factor OS=Haemophilus parasuis ... [more]
RRF_BORPE1.798e-3347.26Ribosome-recycling factor OS=Bordetella pertussis ... [more]
RRF_BORPA1.798e-3347.26Ribosome-recycling factor OS=Bordetella parapertus... [more]
RRF_BORBR1.798e-3347.26Ribosome-recycling factor OS=Bordetella bronchisep... [more]
RRF_SHEB92.348e-3344.06Ribosome-recycling factor OS=Shewanella baltica (s... [more]
RRF_SHEB82.348e-3344.06Ribosome-recycling factor OS=Shewanella baltica (s... [more]
RRF_LEPBP2.348e-3347.95Ribosome-recycling factor OS=Leptospira biflexa se... [more]
RRF_LEPBA2.348e-3347.95Ribosome-recycling factor OS=Leptospira biflexa se... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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