CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHESM (Ribosome-recycling factor OS=Shewanella sp. (strain MR-4) GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   D+ +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    ++QK TD ++KK+D I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_GEOUR (Ribosome-recycling factor OS=Geobacter uraniireducens (strain Rf4) GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 63/144 (43.75%), Postives = 106/144 (73.61%), Query Frame = -2
Query:  219 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 650
            ++  +LD+I+V++YG+P  +  +A +  P+  ++ +QP+D   +  IEKAI++++LG+TP NDG+VIRL +P LT ERRK++ K + K AE+ KVAVRNIRRDA+   +K +K+KK+SED++K    ++Q +T+ ++ KID ++
Sbjct:   32 ASTGLLDEIKVDFYGTPSPINQVATLAVPEPRTITLQPWDAKMIPVIEKAIMNANLGLTPANDGKVIRLNIPPLTEERRKDIVKQLKKLAEDAKVAVRNIRRDAIDELKKQEKDKKISEDDLKRAEKEVQDVTNSHVAKIDEVF 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURP8 (Ribosome-recycling factor OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 66/143 (46.15%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD I+V+YYGSPV +  +A +   D+ ++ +QP++K  +  +EKAI  SDLG+ P + G+VIR+ +P LT ERRKEL+KVV  + E  KVAVRN+RRDA +  +KL K+K++SED+ +    D+QKLTD+++ +ID +
Sbjct:   33 AHTGLLDHIQVDYYGSPVPISQVANLTLVDARTIGVQPWEKKMVAVVEKAIRESDLGLNPASHGDVIRVPMPPLTEERRKELTKVVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THESQ (Ribosome-recycling factor OS=Thermotoga sp. (strain RQ2) GN=frr PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 67/144 (46.53%), Postives = 105/144 (72.92%), Query Frame = -2
Query:  216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647
            +PA+L++I+V+YYG P  +  +A I+  +  +L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEGK+A+RNIRR+ LK  ++ QKE  + ED+ K L +++QKLTDE+++K+D +++
Sbjct:   33 SPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFE 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THEMA (Ribosome-recycling factor OS=Thermotoga maritima GN=frr PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 67/144 (46.53%), Postives = 105/144 (72.92%), Query Frame = -2
Query:  216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647
            +PA+L++I+V+YYG P  +  +A I+  +  +L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEGK+A+RNIRR+ LK  ++ QKE  + ED+ K L +++QKLTDE+++K+D +++
Sbjct:   33 SPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFE 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THEAB (Ribosome-recycling factor OS=Thermosipho africanus (strain TCF52B) GN=frr PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 62/145 (42.76%), Postives = 105/145 (72.41%), Query Frame = -2
Query:  213 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 647
            +PA+L++I+++YYG P  +  +A IN  +  SL+I+P++K+ L +IEKAI +SDLG+ P NDG V+RL  P  T+E+R++  K   +  E GK+AVRNIRRD +K  +++ K  ++SED+ K L  ++Q LTD+Y++++D ++++
Sbjct:   33 SPALLEEIKIDYYGVPTPINQVATINVTEERSLIIKPWEKNLLSAIEKAIQASDLGLNPTNDGNVVRLVFPSPTTEQRQKWVKKTKEIVEHGKIAVRNIRRDVIKELKEMTKNGEISEDDEKRLEKEVQNLTDKYIEELDKLFER 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAES (Ribosome-recycling factor OS=Staphylococcus epidermidis (strain ATCC 12228) GN=frr PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 66/143 (46.15%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +L+ + V+YYG+P  ++ +A IN P++  L+I PYDKSS+  IEKAI++++LG+ P +DGEVIR+++P LT ERRKEL K V K  E+ KV++RNIRRD     +K +K   ++ED+++  + D+QK TD  +K+ID +
Sbjct:   31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQL 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAEQ (Ribosome-recycling factor OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=frr PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 66/143 (46.15%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +L+ + V+YYG+P  ++ +A IN P++  L+I PYDKSS+  IEKAI++++LG+ P +DGEVIR+++P LT ERRKEL K V K  E+ KV++RNIRRD     +K +K   ++ED+++  + D+QK TD  +K+ID +
Sbjct:   31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQL 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ROSS1 (Ribosome-recycling factor OS=Roseiflexus sp. (strain RS-1) GN=frr PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 66/143 (46.15%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++PA+++ + VE YG+ + L  +A I  P+   L+IQP+D +++K+I KAI++S+LG+TP +DG VIRL +PQLT  RRKEL+K+V  + EE K+A+RNIRR+AL+    L+ EK +SED  +     LQ+LTD +++++D I
Sbjct:   32 ASPALVEHLHVEAYGATLPLNQLATITVPEPRLLVIQPFDANTVKAISKAIMNSELGITPTDDGRVIRLAIPQLTEARRKELTKLVRARVEESKIALRNIRREALEDLRDLEHEKMISEDEHRRAQEKLQELTDRFVRELDHI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEUMM (Ribosome-recycling factor OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=frr PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 68/143 (47.55%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP +L+++EVEYYG+   L  +A I+ P++  LLI P+DKS+L++I  AI  SDLG+ P +DG ++RL +PQ+T ERRKEL+K V  +AE+ KV+VRN+RRD +   + ++K+K + ED+ +      QKLTDE +K ID I
Sbjct:   31 ANPNILNRVEVEYYGAMTPLNQVASISVPEARILLITPFDKSALEAIVHAINVSDLGLNPASDGNIVRLAIPQMTEERRKELAKEVKAEAEKAKVSVRNVRRDIM---DDIKKDKDMPEDDARKAEDQTQKLTDENIKAIDEI 170          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SHESM5.231e-3344.06Ribosome-recycling factor OS=Shewanella sp. (strai... [more]
RRF_GEOUR5.231e-3343.75Ribosome-recycling factor OS=Geobacter uraniireduc... [more]
RRF_BURP85.231e-3346.15Ribosome-recycling factor OS=Burkholderia phymatum... [more]
RRF_THESQ6.832e-3346.53Ribosome-recycling factor OS=Thermotoga sp. (strai... [more]
RRF_THEMA6.832e-3346.53Ribosome-recycling factor OS=Thermotoga maritima G... [more]
RRF_THEAB6.832e-3342.76Ribosome-recycling factor OS=Thermosipho africanus... [more]
RRF_STAES6.832e-3346.15Ribosome-recycling factor OS=Staphylococcus epider... [more]
RRF_STAEQ6.832e-3346.15Ribosome-recycling factor OS=Staphylococcus epider... [more]
RRF_ROSS16.832e-3346.15Ribosome-recycling factor OS=Roseiflexus sp. (stra... [more]
RRF_LEUMM6.832e-3347.55Ribosome-recycling factor OS=Leuconostoc mesentero... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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