CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHESM (Ribosome-recycling factor OS=Shewanella sp. (strain MR-4) GN=frr PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33 Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I+V YYG+ L +A + D+ +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE G+VA+RN+RRDA+ +KL+K K+ +ED+V+ ++QK TD ++KK+D I Sbjct: 32 AHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_GEOUR (Ribosome-recycling factor OS=Geobacter uraniireducens (strain Rf4) GN=frr PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33 Identity = 63/144 (43.75%), Postives = 106/144 (73.61%), Query Frame = -2 Query: 219 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 650 ++ +LD+I+V++YG+P + +A + P+ ++ +QP+D + IEKAI++++LG+TP NDG+VIRL +P LT ERRK++ K + K AE+ KVAVRNIRRDA+ +K +K+KK+SED++K ++Q +T+ ++ KID ++ Sbjct: 32 ASTGLLDEIKVDFYGTPSPINQVATLAVPEPRTITLQPWDAKMIPVIEKAIMNANLGLTPANDGKVIRLNIPPLTEERRKDIVKQLKKLAEDAKVAVRNIRRDAIDELKKQEKDKKISEDDLKRAEKEVQDVTNSHVAKIDEVF 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURP8 (Ribosome-recycling factor OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=frr PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33 Identity = 66/143 (46.15%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD I+V+YYGSPV + +A + D+ ++ +QP++K + +EKAI SDLG+ P + G+VIR+ +P LT ERRKEL+KVV + E KVAVRN+RRDA + +KL K+K++SED+ + D+QKLTD+++ +ID + Sbjct: 33 AHTGLLDHIQVDYYGSPVPISQVANLTLVDARTIGVQPWEKKMVAVVEKAIRESDLGLNPASHGDVIRVPMPPLTEERRKELTKVVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THESQ (Ribosome-recycling factor OS=Thermotoga sp. (strain RQ2) GN=frr PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33 Identity = 67/144 (46.53%), Postives = 105/144 (72.92%), Query Frame = -2 Query: 216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647 +PA+L++I+V+YYG P + +A I+ + +L+I+P+DKS L IEKAI +SDLG+ P NDG VIRL P T+E+R++ K + EEGK+A+RNIRR+ LK ++ QKE + ED+ K L +++QKLTDE+++K+D +++ Sbjct: 33 SPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFE 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THEMA (Ribosome-recycling factor OS=Thermotoga maritima GN=frr PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33 Identity = 67/144 (46.53%), Postives = 105/144 (72.92%), Query Frame = -2 Query: 216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647 +PA+L++I+V+YYG P + +A I+ + +L+I+P+DKS L IEKAI +SDLG+ P NDG VIRL P T+E+R++ K + EEGK+A+RNIRR+ LK ++ QKE + ED+ K L +++QKLTDE+++K+D +++ Sbjct: 33 SPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFE 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THEAB (Ribosome-recycling factor OS=Thermosipho africanus (strain TCF52B) GN=frr PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33 Identity = 62/145 (42.76%), Postives = 105/145 (72.41%), Query Frame = -2 Query: 213 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 647 +PA+L++I+++YYG P + +A IN + SL+I+P++K+ L +IEKAI +SDLG+ P NDG V+RL P T+E+R++ K + E GK+AVRNIRRD +K +++ K ++SED+ K L ++Q LTD+Y++++D ++++ Sbjct: 33 SPALLEEIKIDYYGVPTPINQVATINVTEERSLIIKPWEKNLLSAIEKAIQASDLGLNPTNDGNVVRLVFPSPTTEQRQKWVKKTKEIVEHGKIAVRNIRRDVIKELKEMTKNGEISEDDEKRLEKEVQNLTDKYIEELDKLFER 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAES (Ribosome-recycling factor OS=Staphylococcus epidermidis (strain ATCC 12228) GN=frr PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33 Identity = 66/143 (46.15%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +N +L+ + V+YYG+P ++ +A IN P++ L+I PYDKSS+ IEKAI++++LG+ P +DGEVIR+++P LT ERRKEL K V K E+ KV++RNIRRD +K +K ++ED+++ + D+QK TD +K+ID + Sbjct: 31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQL 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAEQ (Ribosome-recycling factor OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=frr PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33 Identity = 66/143 (46.15%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +N +L+ + V+YYG+P ++ +A IN P++ L+I PYDKSS+ IEKAI++++LG+ P +DGEVIR+++P LT ERRKEL K V K E+ KV++RNIRRD +K +K ++ED+++ + D+QK TD +K+ID + Sbjct: 31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKSSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKEIDQL 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ROSS1 (Ribosome-recycling factor OS=Roseiflexus sp. (strain RS-1) GN=frr PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33 Identity = 66/143 (46.15%), Postives = 104/143 (72.73%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++PA+++ + VE YG+ + L +A I P+ L+IQP+D +++K+I KAI++S+LG+TP +DG VIRL +PQLT RRKEL+K+V + EE K+A+RNIRR+AL+ L+ EK +SED + LQ+LTD +++++D I Sbjct: 32 ASPALVEHLHVEAYGATLPLNQLATITVPEPRLLVIQPFDANTVKAISKAIMNSELGITPTDDGRVIRLAIPQLTEARRKELTKLVRARVEESKIALRNIRREALEDLRDLEHEKMISEDEHRRAQEKLQELTDRFVRELDHI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEUMM (Ribosome-recycling factor OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=frr PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33 Identity = 68/143 (47.55%), Postives = 102/143 (71.33%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP +L+++EVEYYG+ L +A I+ P++ LLI P+DKS+L++I AI SDLG+ P +DG ++RL +PQ+T ERRKEL+K V +AE+ KV+VRN+RRD + + ++K+K + ED+ + QKLTDE +K ID I Sbjct: 31 ANPNILNRVEVEYYGAMTPLNQVASISVPEARILLITPFDKSALEAIVHAINVSDLGLNPASDGNIVRLAIPQMTEERRKELAKEVKAEAEKAKVSVRNVRRDIM---DDIKKDKDMPEDDARKAEDQTQKLTDENIKAIDEI 170 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |