CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCS2 (Ribosome-recycling factor OS=Mycobacterium smegmatis GN=frr PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.866e-32
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M ++I ++YYGS   +  +A IN P++  ++I+PY+ S L++IE AI +SDLG+ P+NDG +IR+ +PQLT ERR+EL K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T  Y  +ID + K
Sbjct:   32 ANPGMFNRINIDYYGSMTPITQLASINVPEARLVVIKPYEASQLRAIEDAIRNSDLGVNPSNDGNIIRVAIPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELSRIKKDGEAGEDEVSRAEKDLDKSTHTYTAQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DEIGD (Ribosome-recycling factor OS=Deinococcus geothermalis (strain DSM 11300) GN=frr PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.866e-32
Identity = 64/144 (44.44%), Postives = 102/144 (70.83%), Query Frame = -2
Query:  219 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 650
            +NP +L K+ VEYYGS + +  +A I TPD+ +L+I P+D+ +L  IEKAI  SDLG+ PNN G+ I ++LP LT ERRK+L K     AEE +VA+R+IR+ AL   ++++K + + +D +K   +++QK+TDEY+K+++  +
Sbjct:   34 ANPGILKKVMVEYYGSSMPIDQVASITTPDARTLVITPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEEARVAIRSIRKHAL---DEVKKVEGVGDDEIKRAEAEVQKITDEYIKRVEDTF 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORGB (Ribosome-recycling factor OS=Corynebacterium glutamicum (strain R) GN=frr PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.866e-32
Identity = 62/143 (43.36%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPAM + +  EYYG P  +  ++ I+ P+   LLI+PY+ SS++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERRK++ K+   + E+GK+A+RNIRR  +   +KLQK+    ED V+    +L K+T  ++ ++D +
Sbjct:   32 ANPAMFNGVMAEYYGVPTPITQMSSISVPEPRMLLIKPYEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIRNIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THICR (Ribosome-recycling factor OS=Thiomicrospira crunogena (strain XCL-2) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 58/143 (40.56%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD ++V+YYGS V +  +A +N  D+ +L +QP+++S +  +EKAI++SD+G+ P   G V+R+ +P LT ERRKE  K+   +AE+ KVA+RNIRRDA   ++ L K+K++++D ++     +QK TDE++ ++D +
Sbjct:   32 AHPSILDAVKVDYYGSEVPVSQVANVNVEDARTLTVQPWEQSMVSVVEKAIMTSDIGVNPVTTGNVMRIPMPPLTEERRKEFIKLAKSEAEQTKVAIRNIRRDANADFKNLNKDKEITDDELRQAEEQIQKATDEHVSQVDQM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAAW (Ribosome-recycling factor OS=Staphylococcus aureus (strain MW2) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +L+ + V+YYG+P  ++ +A IN P++  L+I PYDK+S+  IEKAI++++LG+ P +DGEVIR+ +P LT ERRKE  K V K  EE KV+VRNIRRD     +K +K   ++ED ++  + D+QK TD  +K+ID +
Sbjct:   31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQM 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAAU (Ribosome-recycling factor OS=Staphylococcus aureus GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +L+ + V+YYG+P  ++ +A IN P++  L+I PYDK+S+  IEKAI++++LG+ P +DGEVIR+ +P LT ERRKE  K V K  EE KV+VRNIRRD     +K +K   ++ED ++  + D+QK TD  +K+ID +
Sbjct:   31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQM 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAAS (Ribosome-recycling factor OS=Staphylococcus aureus (strain MSSA476) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +L+ + V+YYG+P  ++ +A IN P++  L+I PYDK+S+  IEKAI++++LG+ P +DGEVIR+ +P LT ERRKE  K V K  EE KV+VRNIRRD     +K +K   ++ED ++  + D+QK TD  +K+ID +
Sbjct:   31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQM 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAAR (Ribosome-recycling factor OS=Staphylococcus aureus (strain MRSA252) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +L+ + V+YYG+P  ++ +A IN P++  L+I PYDK+S+  IEKAI++++LG+ P +DGEVIR+ +P LT ERRKE  K V K  EE KV+VRNIRRD     +K +K   ++ED ++  + D+QK TD  +K+ID +
Sbjct:   31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQM 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAAN (Ribosome-recycling factor OS=Staphylococcus aureus (strain N315) GN=frr PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +L+ + V+YYG+P  ++ +A IN P++  L+I PYDK+S+  IEKAI++++LG+ P +DGEVIR+ +P LT ERRKE  K V K  EE KV+VRNIRRD     +K +K   ++ED ++  + D+QK TD  +K+ID +
Sbjct:   31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQM 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STAAM (Ribosome-recycling factor OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=frr PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 66/143 (46.15%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N  +L+ + V+YYG+P  ++ +A IN P++  L+I PYDK+S+  IEKAI++++LG+ P +DGEVIR+ +P LT ERRKE  K V K  EE KV+VRNIRRD     +K +K   ++ED ++  + D+QK TD  +K+ID +
Sbjct:   31 ANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQM 173          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_MYCS29.866e-3243.45Ribosome-recycling factor OS=Mycobacterium smegmat... [more]
RRF_DEIGD9.866e-3244.44Ribosome-recycling factor OS=Deinococcus geotherma... [more]
RRF_CORGB9.866e-3243.36Ribosome-recycling factor OS=Corynebacterium gluta... [more]
RRF_THICR1.289e-3140.56Ribosome-recycling factor OS=Thiomicrospira crunog... [more]
RRF_STAAW1.289e-3146.15Ribosome-recycling factor OS=Staphylococcus aureus... [more]
RRF_STAAU1.289e-3146.15Ribosome-recycling factor OS=Staphylococcus aureus... [more]
RRF_STAAS1.289e-3146.15Ribosome-recycling factor OS=Staphylococcus aureus... [more]
RRF_STAAR1.289e-3146.15Ribosome-recycling factor OS=Staphylococcus aureus... [more]
RRF_STAAN1.289e-3146.15Ribosome-recycling factor OS=Staphylococcus aureus... [more]
RRF_STAAM1.289e-3146.15Ribosome-recycling factor OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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