CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALTY (Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALTI (Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALSV (Ribosome-recycling factor OS=Salmonella schwarzengrund (strain CVM19633) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALPC (Ribosome-recycling factor OS=Salmonella paratyphi C (strain RKS4594) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALPB (Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALNS (Ribosome-recycling factor OS=Salmonella newport (strain SL254) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALHS (Ribosome-recycling factor OS=Salmonella heidelberg (strain SL476) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALG2 (Ribosome-recycling factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALEP (Ribosome-recycling factor OS=Salmonella enteritidis PT4 (strain P125109) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALDC (Ribosome-recycling factor OS=Salmonella dublin (strain CT_02021853) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SALTY2.871e-3145.77Ribosome-recycling factor OS=Salmonella typhimuriu... [more]
RRF_SALTI2.871e-3145.77Ribosome-recycling factor OS=Salmonella typhi GN=f... [more]
RRF_SALSV2.871e-3145.77Ribosome-recycling factor OS=Salmonella schwarzeng... [more]
RRF_SALPC2.871e-3145.77Ribosome-recycling factor OS=Salmonella paratyphi ... [more]
RRF_SALPB2.871e-3145.77Ribosome-recycling factor OS=Salmonella paratyphi ... [more]
RRF_SALNS2.871e-3145.77Ribosome-recycling factor OS=Salmonella newport (s... [more]
RRF_SALHS2.871e-3145.77Ribosome-recycling factor OS=Salmonella heidelberg... [more]
RRF_SALG22.871e-3145.77Ribosome-recycling factor OS=Salmonella gallinarum... [more]
RRF_SALEP2.871e-3145.77Ribosome-recycling factor OS=Salmonella enteritidi... [more]
RRF_SALDC2.871e-3145.77Ribosome-recycling factor OS=Salmonella dublin (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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