CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALCH (Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALAR (Ribosome-recycling factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALA4 (Ribosome-recycling factor OS=Salmonella agona (strain SL483) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/142 (45.77%), Postives = 102/142 (71.83%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RHOBA (Ribosome-recycling factor OS=Rhodopirellula baltica GN=frr PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = -2
Query:  252 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLT 650
            +NP ++D I+VE YGS   LK +A I TP+   +LI+PYD +++K IEKAIV+ DLG+ P NDG VIRL +P L+ E RK++   + + AEE KV++RNIRRDA KA E  +K+K+++ED+       +Q+LT
Sbjct:   33 ANPGLVDSIKVEVYGSLTPLKQLASIGTPEPQQILIRPYDATTIKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAKVSIRNIRRDANKAAETAEKDKEMTEDDRDKTKDQVQELT 165          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RALME (Ribosome-recycling factor OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 62/143 (43.36%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A ++  D+ ++ +QP++K  ++++EKAI   DLG+ P   G+VIR+ +P LT ERR+EL+KVV  +AE  KVAVRN+RRDA + ++KL K+K +SED+ +    ++QKLTD+++ +ID +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVAAVSLADARTISVQPWEKKMVQAVEKAIRDGDLGLNPATMGDVIRVPMPPLTEERRRELTKVVKGEAEGAKVAVRNLRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDKFVAEIDKL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCBT (Ribosome-recycling factor OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRITIDYYGAATLITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCBP (Ribosome-recycling factor OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRITIDYYGAATLITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELAH (Ribosome-recycling factor OS=Helicobacter acinonychis (strain Sheeba) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 64/141 (45.39%), Postives = 99/141 (70.21%), Query Frame = -2
Query:  216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE+AI  +++G+ PNNDGE I+L  P +T+E+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:   36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKVKKLEKDKEISEDESKKAQEQVQKITDEAIKKIDESVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BIFAA (Ribosome-recycling factor OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/143 (45.45%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPA+L+ I V+YYG+P  LK++A I  P+  +L + P+D S   ++EKA+  SDLG +P  DG VIRLT+P+LT ERRKE  K+   +AE+GKVAVRNIRR A ++ +K  K+  + ED    L  +L K+T +   ++D++
Sbjct:   31 ANPALLNGITVDYYGAPTPLKAVATIGVPEPRTLAVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKIAKGKAEDGKVAVRNIRRKAKESLDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDAL 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BAUCH (Ribosome-recycling factor OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 65/146 (44.52%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +NP +LD I+V+YYGS + L+ +A I   D+ +L+I  +D+S +K +EKAI+ SDLG+TP+  G +IR+ LP LT ERR+ L K+V  +AE+GK++VRNIRRDA    + L K K +S D  +   S++QK+T+ +++++D I  +
Sbjct:   32 ANPNLLDNIKVDYYGSIMPLRQLANIIVEDTRTLVITLFDQSIIKRVEKAIIISDLGLTPDLSGTIIRVQLPSLTEERRRNLIKIVRNEAEQGKISVRNIRRDANDHIKILLKNKAISIDEERRSQSEIQKITEAWIRRLDQILSE 177          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SALCH2.871e-3145.77Ribosome-recycling factor OS=Salmonella choleraesu... [more]
RRF_SALAR2.871e-3145.77Ribosome-recycling factor OS=Salmonella arizonae (... [more]
RRF_SALA42.871e-3145.77Ribosome-recycling factor OS=Salmonella agona (str... [more]
RRF_RHOBA2.871e-3148.87Ribosome-recycling factor OS=Rhodopirellula baltic... [more]
RRF_RALME2.871e-3143.36Ribosome-recycling factor OS=Ralstonia metallidura... [more]
RRF_MYCBT2.871e-3143.45Ribosome-recycling factor OS=Mycobacterium bovis (... [more]
RRF_MYCBP2.871e-3143.45Ribosome-recycling factor OS=Mycobacterium bovis (... [more]
RRF_HELAH2.871e-3145.39Ribosome-recycling factor OS=Helicobacter acinonyc... [more]
RRF_BIFAA2.871e-3145.45Ribosome-recycling factor OS=Bifidobacterium adole... [more]
RRF_BAUCH2.871e-3144.52Ribosome-recycling factor OS=Baumannia cicadellini... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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