CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ACIAC (Ribosome-recycling factor OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPA+LD ++VEYYGS V L  +A ++  D+ ++ +QP++K     IEKAI  S+LG+ P + G++IR+ +P ++ ERRKE++K+   + E  KVAVRN+RRDA ++ +KL K+K  SED  K   +D+QK+TD+++ ++D++
Sbjct:   33 ANPALLDSVQVEYYGSMVPLSQVANVSLIDARTISVQPWEKGMGAKIEKAIRESELGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGEGAKVAVRNLRRDANESVKKLVKDKLASEDEQKRAEADIQKVTDKHIAEVDAL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCA9 (Ribosome-recycling factor OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  ++ ++YYG+P  +  +A IN P++  ++I+PY+ + LK+IE AI +SDLG+ P+NDG +IR+ +PQLT ERR+EL K    + E+ KV +RNIRR A     +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFQRVVIDYYGTPTPITQVAGINVPEARMVVIKPYESNQLKAIEDAIRNSDLGLNPSNDGSIIRVAIPQLTEERRRELVKQAKGKGEDAKVTLRNIRRKANDELNRIKKDGEAGEDEVGRAEKDLDKTTAQYVSQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ENT38 (Ribosome-recycling factor OS=Enterobacter sp. (strain 638) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 68/142 (47.89%), Postives = 101/142 (71.13%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   D+ +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRKEL KVV  +AE  +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KK+D+
Sbjct:   32 ASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLKINVFDRSLGPAVEKAIMASDLGLNPSSAGTDIRVPLPALTEERRKELIKVVRGEAEGARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKLDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BRASO (Ribosome-recycling factor OS=Bradyrhizobium sp. (strain ORS278) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++ +M++ ++VE YGS + L  +A ++ P+   L +Q +D+S +K++EKAIV S+LG++P  +G+VIRL +P+L  ERRKEL KV  K AE+ +VAVR++RRD L   +KL+K  ++SED+ + L+ D+QK TD  + +ID +
Sbjct:   34 ASASMVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDRSMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEQARVAVRHVRRDGLDTLKKLEKNHEMSEDDQERLAGDVQKATDSVISEIDQL 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_AMOA5 (Ribosome-recycling factor OS=Amoebophilus asiaticus (strain 5a2) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 64/141 (45.39%), Postives = 98/141 (69.50%), Query Frame = -2
Query:  222 PAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 644
            P MLD I + YY +   L  +A I TPD+ +L+I+P+++  ++ IEKAIV+S LG+ P NDGEV+R+ +P LT ERRK+L K    +AE+GK+++RNIR+D  + ++ LQK+   SED +K     LQ LTD+++  ID++
Sbjct:   36 PDMLDGISILYYNAMTPLNQVAAITTPDARTLVIKPWERKCIQEIEKAIVNSKLGLNPQNDGEVVRIIVPPLTEERRKDLVKQAKNEAEKGKISIRNIRKDIKETFKHLQKD-GASEDTIKRAEEKLQNLTDKHIHNIDNL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ALHEH (Ribosome-recycling factor OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD I V YYG+ V L   A +   D+ +L + P++KS +  +EKAI SSDLG+TP   G VIR+ +P LT +RRKEL KVV  +AE+ +VA+RNIRRDA    ++L KEK++SED  +     +QKLTD+Y  ++D I ++
Sbjct:   36 LLDHISVTYYGTEVPLNQAASVKVEDARTLSVIPFEKSMVPEVEKAIQSSDLGLTPTTAGTVIRIPMPPLTEDRRKELVKVVRSEAEQARVAIRNIRRDANSDLKELLKEKEISEDEERGGEDAIQKLTDKYTGEVDRILQE 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_TOLAT (Ribosome-recycling factor OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=frr PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31
Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + PA+LD I VEYYGS   L+ +A +   DS +L +  +D+S ++++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L K+V  +AE+ +V+VRN+RRD     + L K+K +SED+ +    ++QKLTD ++K +D +
Sbjct:   32 AQPALLDGIMVEYYGSATPLRQVANVVAEDSRTLAVSVFDRSMIQAVEKAIMTSDLGLNPSSAGTTIRVPLPALTEERRKDLIKLVRAEAEQARVSVRNVRRDCNADLKALLKDKDISEDDDRRAQEEIQKLTDSFVKLVDDL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RUTMC (Ribosome-recycling factor OS=Ruthia magnifica subsp. Calyptogena magnifica GN=frr PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31
Identity = 62/142 (43.66%), Postives = 101/142 (71.13%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++ ++L++I V+YYGS V L  +A I+  DS +  + P++K  +  IEKAI++S+LG+ P   G+++R+ LP LT ERR EL K+V  +AE+ KVA+RNIRRDA   +++L KEK++S D  +   + +QK+TD Y+K+I++
Sbjct:   32 AHSSLLEQIHVDYYGSMVPLSQVANISVEDSRTFKVSPWEKDMVAVIEKAIMTSNLGLNPQTMGQIMRIPLPPLTQERRGELVKIVKDEAEQAKVAIRNIRRDANSDFKELLKEKEISRDGARKAENSIQKITDTYIKEIEA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RHOP5 (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain BisA53) GN=frr PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31
Identity = 63/143 (44.06%), Postives = 105/143 (73.43%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++ +ML+ ++V+ YG+ + L  +A I+ P+   L +Q +DKS +K++EKAIV S+LG++P+ +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ + L+ D+QK+TD  ++++D +
Sbjct:   34 ASSSMLEPVQVDAYGTHMPLIQVATISVPEPRLLSVQVWDKSMIKAVEKAIVDSNLGLSPSTEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTLKKLEKNHEISEDDQERLAHDVQKVTDATIQEVDQL 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PHOPR (Ribosome-recycling factor OS=Photobacterium profundum GN=frr PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31
Identity = 67/143 (46.85%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I VEYYG+   LK +A +   DS +L I  +D+     IEKAI+ SDLG+ P + G VIR+ LP LT ERR++L K+V K+AE+G+VA+RNIRRDA    + L K+K++SED+ +    ++QKLTD  +K I+++
Sbjct:   32 AHPSLLDTIYVEYYGANTPLKQLANVVAEDSRTLAITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKEAEQGRVAIRNIRRDANADLKALLKDKEISEDDDRRAQDEIQKLTDVAVKNIEAV 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_ACIAC2.871e-3143.36Ribosome-recycling factor OS=Acidovorax avenae sub... [more]
RRF_MYCA93.749e-3142.07Ribosome-recycling factor OS=Mycobacterium abscess... [more]
RRF_ENT383.749e-3147.89Ribosome-recycling factor OS=Enterobacter sp. (str... [more]
RRF_BRASO3.749e-3144.06Ribosome-recycling factor OS=Bradyrhizobium sp. (s... [more]
RRF_AMOA53.749e-3145.39Ribosome-recycling factor OS=Amoebophilus asiaticu... [more]
RRF_ALHEH3.749e-3147.18Ribosome-recycling factor OS=Alkalilimnicola ehrli... [more]
RRF_TOLAT4.896e-3144.06Ribosome-recycling factor OS=Tolumonas auensis (st... [more]
RRF_RUTMC4.896e-3143.66Ribosome-recycling factor OS=Ruthia magnifica subs... [more]
RRF_RHOP54.896e-3144.06Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_PHOPR4.896e-3146.85Ribosome-recycling factor OS=Photobacterium profun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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