CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ACIAC (Ribosome-recycling factor OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPA+LD ++VEYYGS V L +A ++ D+ ++ +QP++K IEKAI S+LG+ P + G++IR+ +P ++ ERRKE++K+ + E KVAVRN+RRDA ++ +KL K+K SED K +D+QK+TD+++ ++D++ Sbjct: 33 ANPALLDSVQVEYYGSMVPLSQVANVSLIDARTISVQPWEKGMGAKIEKAIRESELGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGEGAKVAVRNLRRDANESVKKLVKDKLASEDEQKRAEADIQKVTDKHIAEVDAL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCA9 (Ribosome-recycling factor OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=frr PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31 Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M ++ ++YYG+P + +A IN P++ ++I+PY+ + LK+IE AI +SDLG+ P+NDG +IR+ +PQLT ERR+EL K + E+ KV +RNIRR A +++K+ + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFQRVVIDYYGTPTPITQVAGINVPEARMVVIKPYESNQLKAIEDAIRNSDLGLNPSNDGSIIRVAIPQLTEERRRELVKQAKGKGEDAKVTLRNIRRKANDELNRIKKDGEAGEDEVGRAEKDLDKTTAQYVSQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ENT38 (Ribosome-recycling factor OS=Enterobacter sp. (strain 638) GN=frr PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31 Identity = 68/142 (47.89%), Postives = 101/142 (71.13%), Query Frame = -2 Query: 225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650 ++P++LD I VEYYG+P L+ +A + D+ +L I +D+S ++EKAI++SDLG+ P++ G IR+ LP LT ERRKEL KVV +AE +VAVRN+RRDA + L K+K++SED+ + D+QKLTD +KK+D+ Sbjct: 32 ASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLKINVFDRSLGPAVEKAIMASDLGLNPSSAGTDIRVPLPALTEERRKELIKVVRGEAEGARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKLDA 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BRASO (Ribosome-recycling factor OS=Bradyrhizobium sp. (strain ORS278) GN=frr PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31 Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +M++ ++VE YGS + L +A ++ P+ L +Q +D+S +K++EKAIV S+LG++P +G+VIRL +P+L ERRKEL KV K AE+ +VAVR++RRD L +KL+K ++SED+ + L+ D+QK TD + +ID + Sbjct: 34 ASASMVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDRSMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEQARVAVRHVRRDGLDTLKKLEKNHEMSEDDQERLAGDVQKATDSVISEIDQL 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_AMOA5 (Ribosome-recycling factor OS=Amoebophilus asiaticus (strain 5a2) GN=frr PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31 Identity = 64/141 (45.39%), Postives = 98/141 (69.50%), Query Frame = -2 Query: 222 PAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 644 P MLD I + YY + L +A I TPD+ +L+I+P+++ ++ IEKAIV+S LG+ P NDGEV+R+ +P LT ERRK+L K +AE+GK+++RNIR+D + ++ LQK+ SED +K LQ LTD+++ ID++ Sbjct: 36 PDMLDGISILYYNAMTPLNQVAAITTPDARTLVIKPWERKCIQEIEKAIVNSKLGLNPQNDGEVVRIIVPPLTEERRKDLVKQAKNEAEKGKISIRNIRKDIKETFKHLQKD-GASEDTIKRAEEKLQNLTDKHIHNIDNL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ALHEH (Ribosome-recycling factor OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=frr PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31 Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD I V YYG+ V L A + D+ +L + P++KS + +EKAI SSDLG+TP G VIR+ +P LT +RRKEL KVV +AE+ +VA+RNIRRDA ++L KEK++SED + +QKLTD+Y ++D I ++ Sbjct: 36 LLDHISVTYYGTEVPLNQAASVKVEDARTLSVIPFEKSMVPEVEKAIQSSDLGLTPTTAGTVIRIPMPPLTEDRRKELVKVVRSEAEQARVAIRNIRRDANSDLKELLKEKEISEDEERGGEDAIQKLTDKYTGEVDRILQE 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_TOLAT (Ribosome-recycling factor OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 + PA+LD I VEYYGS L+ +A + DS +L + +D+S ++++EKAI++SDLG+ P++ G IR+ LP LT ERRK+L K+V +AE+ +V+VRN+RRD + L K+K +SED+ + ++QKLTD ++K +D + Sbjct: 32 AQPALLDGIMVEYYGSATPLRQVANVVAEDSRTLAVSVFDRSMIQAVEKAIMTSDLGLNPSSAGTTIRVPLPALTEERRKDLIKLVRAEAEQARVSVRNVRRDCNADLKALLKDKDISEDDDRRAQEEIQKLTDSFVKLVDDL 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RUTMC (Ribosome-recycling factor OS=Ruthia magnifica subsp. Calyptogena magnifica GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 62/142 (43.66%), Postives = 101/142 (71.13%), Query Frame = -2 Query: 225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650 ++ ++L++I V+YYGS V L +A I+ DS + + P++K + IEKAI++S+LG+ P G+++R+ LP LT ERR EL K+V +AE+ KVA+RNIRRDA +++L KEK++S D + + +QK+TD Y+K+I++ Sbjct: 32 AHSSLLEQIHVDYYGSMVPLSQVANISVEDSRTFKVSPWEKDMVAVIEKAIMTSNLGLNPQTMGQIMRIPLPPLTQERRGELVKIVKDEAEQAKVAIRNIRRDANSDFKELLKEKEISRDGARKAENSIQKITDTYIKEIEA 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RHOP5 (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain BisA53) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 63/143 (44.06%), Postives = 105/143 (73.43%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +ML+ ++V+ YG+ + L +A I+ P+ L +Q +DKS +K++EKAIV S+LG++P+ +G+VIRL +P+L ERRKEL KV K AE +VAVR++RRD L +KL+K ++SED+ + L+ D+QK+TD ++++D + Sbjct: 34 ASSSMLEPVQVDAYGTHMPLIQVATISVPEPRLLSVQVWDKSMIKAVEKAIVDSNLGLSPSTEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTLKKLEKNHEISEDDQERLAHDVQKVTDATIQEVDQL 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PHOPR (Ribosome-recycling factor OS=Photobacterium profundum GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 67/143 (46.85%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I VEYYG+ LK +A + DS +L I +D+ IEKAI+ SDLG+ P + G VIR+ LP LT ERR++L K+V K+AE+G+VA+RNIRRDA + L K+K++SED+ + ++QKLTD +K I+++ Sbjct: 32 AHPSLLDTIYVEYYGANTPLKQLANVVAEDSRTLAITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKEAEQGRVAIRNIRRDANADLKALLKDKEISEDDDRRAQDEIQKLTDVAVKNIEAV 174 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |