CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_NITMU (Ribosome-recycling factor OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 63/143 (44.06%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD + V+YYG+P ++  +A I+  D+ ++ + P++K  L +IEKAI +SDLG+ P   GE+IR+ +P LT ERR++L+KVV  + E  +VA+RNIRRDA    + L KEKK++ED  +    D+QKLTD Y+  ID +
Sbjct:   32 AHTGLLDHVTVDYYGNPTAINQVANISLADARTITVAPWEKKMLGAIEKAIRNSDLGLNPTTVGELIRVPMPPLTEERRRDLTKVVKHEGEAARVAMRNIRRDANAHLKDLLKEKKIAEDEERKGQEDIQKLTDRYIADIDKL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCVP (Ribosome-recycling factor OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 62/145 (42.76%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M ++I V+YYG+   +  ++ IN P++  ++I+PY+ S L+ IE AI +SDLG+ P NDG VIR+++PQLT ERR++L K    + E+ KV+VRNIRR A++   +++K+    ED+V     DL K T +Y  +ID + K
Sbjct:   32 ANPGMFNRIHVDYYGAVTPITQLSSINVPEARMVVIKPYEASQLRPIEDAIRNSDLGVNPTNDGNVIRVSIPQLTEERRRDLVKQAKGKGEDAKVSVRNIRRKAMEELTRIKKDGDAGEDDVARAEKDLDKTTQQYTHQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_EDWI9 (Ribosome-recycling factor OS=Edwardsiella ictaluri (strain 93-146) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P +LD I+VEYYG+   L+ +A I   DS +L +  +D+S   +IEKAI++SDLG+ P + G VIR+ LP LT ERRK+L K+V  +AE G+V+VRN+RRDA    + L K+K++SED  +    ++QK+TD  +KKID+
Sbjct:   32 AHPNLLDGIQVEYYGTATPLRQLANIVAEDSRTLALTVFDRSMSGAIEKAILTSDLGLNPASAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRVSVRNVRRDANDKVKALLKDKEISEDEDRKSQEEIQKITDLMIKKIDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DESPS (Ribosome-recycling factor OS=Desulfotalea psychrophila GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 65/140 (46.43%), Postives = 97/140 (69.29%), Query Frame = -2
Query:  222 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 641
            ++LD I V  YGS + L  +A +  P+S  + +QP+D   +  IEKAI+ S LG+ P NDG+V+RL +PQLT +RRK+L K V K AEE +VA+RN+RRDA+   +  +K+K++SED++  L  D QK TD Y+K++D +
Sbjct:   34 SILDDITVVAYGSTMPLNQVATLTIPESRMIALQPWDPQMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKKIAEEFRVAIRNVRRDAIDTLKLQKKDKEISEDDLFKLQDDAQKETDIYIKQLDEV 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_NOVAD (Ribosome-recycling factor OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 64/141 (45.39%), Postives = 98/141 (69.50%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            +N A+LD I VE YGS + L  +A ++ P+   L +Q +DKS++  +EKAI S+ LG+ P +DG  +RL +P LT ERRKEL+K+ +K AE  ++A+RN+RRD + A +  + +K++SED  K   +DLQKLTD+ +K+ D
Sbjct:   32 ANTALLDPIVVEVYGSHMPLAQVATVSAPEPRLLSVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASKYAENARIAIRNVRRDGMDALKADESKKEISEDERKRAETDLQKLTDDIIKQAD 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DEIDV (Ribosome-recycling factor OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 63/144 (43.75%), Postives = 102/144 (70.83%), Query Frame = -2
Query:  219 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 650
            +NP +L K+ V+YYGS + +  +A I TPD+ +L+I P+D+ +L  IEKAI  SDLG+ PNN G+ I ++LP LT ERRK+L K     AE+ ++AVRNIR+ AL   ++++K + + +D +K   +++QK+TDE++ ++DS +
Sbjct:   34 ANPGILKKVIVDYYGSTMPIDQVASITTPDARTLVITPWDRGALGPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNIRKHAL---DEVKKVEGVGDDEIKRGEAEVQKITDEFIARVDSTF 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BRASB (Ribosome-recycling factor OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++ +M++ ++VE YGS + L  +A ++ P+   L +Q +D++ +K++EKAIV S+LG++P  +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ + L++D+QK TD  + +ID +
Sbjct:   34 ASASMVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDRTMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEAARVAVRHVRRDGLDTVKKLEKNHEISEDDQERLATDIQKATDSVISEIDQL 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SODGM (Ribosome-recycling factor OS=Sodalis glossinidius (strain morsitans) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 64/142 (45.07%), Postives = 101/142 (71.13%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+++YYG    L+ +A I   DS +L I  +D++   ++EKAI++SDLG+ P++ G VIR+ LP LT ERR++L KVV  +AE+G+V+VRN+RRDA    + L K+K + ED  +    ++QKLTD ++KK+DS
Sbjct:   32 ASPSLLDGIQIDYYGLLTPLRQLANIIAEDSRTLAITVFDRTLAPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRRDLIKVVRAEAEQGRVSVRNVRRDANDKVKALLKDKTIGEDEDRRSQDEIQKLTDAWIKKLDS 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURTA (Ribosome-recycling factor OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 61/143 (42.66%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVAVRN+RRDA +  +KL K+K++SED+ +    D+QKLTD+++ +ID +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKGEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORA1 (Ribosome-recycling factor OS=Bordetella avium (strain 197N) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 65/146 (44.52%), Postives = 101/146 (69.18%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++  +LD ++VEYYGSPV +  +A +N  D+ ++ +QPY+K     IE+AI  SDLG+ P + G+ IR+ +P LT ERR++L+KVV  + E+ KVAVRN+RR+A +A +KL K+K +SED+ +    ++QKLTD  +  ID +  Q
Sbjct:   33 AHAGILDHVQVEYYGSPVPVGQVANLNLVDARTISVQPYEKHMAGPIERAIRDSDLGLNPVSLGDTIRVPMPALTEERRRDLTKVVRSEGEDAKVAVRNLRREANEALKKLVKDKIISEDDERRGQDEVQKLTDRAVADIDKMVTQ 178          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_NITMU8.352e-3144.06Ribosome-recycling factor OS=Nitrosospira multifor... [more]
RRF_MYCVP8.352e-3142.76Ribosome-recycling factor OS=Mycobacterium vanbaal... [more]
RRF_EDWI98.352e-3147.18Ribosome-recycling factor OS=Edwardsiella ictaluri... [more]
RRF_DESPS8.352e-3146.43Ribosome-recycling factor OS=Desulfotalea psychrop... [more]
RRF_NOVAD1.091e-3045.39Ribosome-recycling factor OS=Novosphingobium aroma... [more]
RRF_DEIDV1.091e-3043.75Ribosome-recycling factor OS=Deinococcus deserti (... [more]
RRF_BRASB1.091e-3043.36Ribosome-recycling factor OS=Bradyrhizobium sp. (s... [more]
RRF_SODGM1.425e-3045.07Ribosome-recycling factor OS=Sodalis glossinidius ... [more]
RRF_BURTA1.425e-3042.66Ribosome-recycling factor OS=Burkholderia thailand... [more]
RRF_BORA11.425e-3044.52Ribosome-recycling factor OS=Bordetella avium (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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