CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_NITMU (Ribosome-recycling factor OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=frr PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31 Identity = 63/143 (44.06%), Postives = 98/143 (68.53%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD + V+YYG+P ++ +A I+ D+ ++ + P++K L +IEKAI +SDLG+ P GE+IR+ +P LT ERR++L+KVV + E +VA+RNIRRDA + L KEKK++ED + D+QKLTD Y+ ID + Sbjct: 32 AHTGLLDHVTVDYYGNPTAINQVANISLADARTITVAPWEKKMLGAIEKAIRNSDLGLNPTTVGELIRVPMPPLTEERRRDLTKVVKHEGEAARVAMRNIRRDANAHLKDLLKEKKIAEDEERKGQEDIQKLTDRYIADIDKL 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCVP (Ribosome-recycling factor OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=frr PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31 Identity = 62/145 (42.76%), Postives = 97/145 (66.90%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M ++I V+YYG+ + ++ IN P++ ++I+PY+ S L+ IE AI +SDLG+ P NDG VIR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ ED+V DL K T +Y +ID + K Sbjct: 32 ANPGMFNRIHVDYYGAVTPITQLSSINVPEARMVVIKPYEASQLRPIEDAIRNSDLGVNPTNDGNVIRVSIPQLTEERRRDLVKQAKGKGEDAKVSVRNIRRKAMEELTRIKKDGDAGEDDVARAEKDLDKTTQQYTHQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_EDWI9 (Ribosome-recycling factor OS=Edwardsiella ictaluri (strain 93-146) GN=frr PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31 Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = -2 Query: 225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650 ++P +LD I+VEYYG+ L+ +A I DS +L + +D+S +IEKAI++SDLG+ P + G VIR+ LP LT ERRK+L K+V +AE G+V+VRN+RRDA + L K+K++SED + ++QK+TD +KKID+ Sbjct: 32 AHPNLLDGIQVEYYGTATPLRQLANIVAEDSRTLALTVFDRSMSGAIEKAILTSDLGLNPASAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRVSVRNVRRDANDKVKALLKDKEISEDEDRKSQEEIQKITDLMIKKIDA 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DESPS (Ribosome-recycling factor OS=Desulfotalea psychrophila GN=frr PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31 Identity = 65/140 (46.43%), Postives = 97/140 (69.29%), Query Frame = -2 Query: 222 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 641 ++LD I V YGS + L +A + P+S + +QP+D + IEKAI+ S LG+ P NDG+V+RL +PQLT +RRK+L K V K AEE +VA+RN+RRDA+ + +K+K++SED++ L D QK TD Y+K++D + Sbjct: 34 SILDDITVVAYGSTMPLNQVATLTIPESRMIALQPWDPQMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKKIAEEFRVAIRNVRRDAIDTLKLQKKDKEISEDDLFKLQDDAQKETDIYIKQLDEV 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_NOVAD (Ribosome-recycling factor OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=frr PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30 Identity = 64/141 (45.39%), Postives = 98/141 (69.50%), Query Frame = -2 Query: 228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650 +N A+LD I VE YGS + L +A ++ P+ L +Q +DKS++ +EKAI S+ LG+ P +DG +RL +P LT ERRKEL+K+ +K AE ++A+RN+RRD + A + + +K++SED K +DLQKLTD+ +K+ D Sbjct: 32 ANTALLDPIVVEVYGSHMPLAQVATVSAPEPRLLSVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASKYAENARIAIRNVRRDGMDALKADESKKEISEDERKRAETDLQKLTDDIIKQAD 172
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DEIDV (Ribosome-recycling factor OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=frr PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30 Identity = 63/144 (43.75%), Postives = 102/144 (70.83%), Query Frame = -2 Query: 219 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 650 +NP +L K+ V+YYGS + + +A I TPD+ +L+I P+D+ +L IEKAI SDLG+ PNN G+ I ++LP LT ERRK+L K AE+ ++AVRNIR+ AL ++++K + + +D +K +++QK+TDE++ ++DS + Sbjct: 34 ANPGILKKVIVDYYGSTMPIDQVASITTPDARTLVITPWDRGALGPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNIRKHAL---DEVKKVEGVGDDEIKRGEAEVQKITDEFIARVDSTF 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BRASB (Ribosome-recycling factor OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=frr PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30 Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +M++ ++VE YGS + L +A ++ P+ L +Q +D++ +K++EKAIV S+LG++P +G+VIRL +P+L ERRKEL KV K AE +VAVR++RRD L +KL+K ++SED+ + L++D+QK TD + +ID + Sbjct: 34 ASASMVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDRTMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEAARVAVRHVRRDGLDTVKKLEKNHEISEDDQERLATDIQKATDSVISEIDQL 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SODGM (Ribosome-recycling factor OS=Sodalis glossinidius (strain morsitans) GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 64/142 (45.07%), Postives = 101/142 (71.13%), Query Frame = -2 Query: 225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650 ++P++LD I+++YYG L+ +A I DS +L I +D++ ++EKAI++SDLG+ P++ G VIR+ LP LT ERR++L KVV +AE+G+V+VRN+RRDA + L K+K + ED + ++QKLTD ++KK+DS Sbjct: 32 ASPSLLDGIQIDYYGLLTPLRQLANIIAEDSRTLAITVFDRTLAPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRRDLIKVVRAEAEQGRVSVRNVRRDANDKVKALLKDKTIGEDEDRRSQDEIQKLTDAWIKKLDS 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURTA (Ribosome-recycling factor OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 61/143 (42.66%), Postives = 102/143 (71.33%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVAVRN+RRDA + +KL K+K++SED+ + D+QKLTD+++ +ID + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKGEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORA1 (Ribosome-recycling factor OS=Bordetella avium (strain 197N) GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 65/146 (44.52%), Postives = 101/146 (69.18%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 ++ +LD ++VEYYGSPV + +A +N D+ ++ +QPY+K IE+AI SDLG+ P + G+ IR+ +P LT ERR++L+KVV + E+ KVAVRN+RR+A +A +KL K+K +SED+ + ++QKLTD + ID + Q Sbjct: 33 AHAGILDHVQVEYYGSPVPVGQVANLNLVDARTISVQPYEKHMAGPIERAIRDSDLGLNPVSLGDTIRVPMPALTEERRRDLTKVVRSEGEDAKVAVRNLRREANEALKKLVKDKIISEDDERRGQDEVQKLTDRAVADIDKMVTQ 178 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |