CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACV8 (Ribosome-recycling factor OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 66/139 (47.48%), Postives = 97/139 (69.78%), Query Frame = -2
Query:  222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638
            +LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS  + IEKAI+ SDLG+TP N+GE+IRL +P LT ERRK+L+K    + E  KV++RN RRDA+   +K  KE  + ED  K+  + LQK+ D+Y+ KI+ +
Sbjct:   38 LLDGIRVDSYGSMVPISNVAAVTTPDARSIAIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAKVSIRNARRDAIDTLKKAVKE-GMPEDEQKNAEAKLQKVHDKYIAKIEEL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACTN (Ribosome-recycling factor OS=Bacteroides thetaiotaomicron GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 65/139 (46.76%), Postives = 100/139 (71.94%), Query Frame = -2
Query:  222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638
            +LD I V+ YGS V + ++A ++TPD+ S+ I+P+DKS  ++IEKAI+ SDLG+ P N+GEVIR+ +P LT ERR++L+K    + E  KV+VRN RRD + A +K  K+  L+ED  K+  + LQK+ D+Y+K+I+ +
Sbjct:   38 LLDGIRVDSYGSMVPISNVAALSTPDARSITIKPWDKSMFRAIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRRQLAKQCKAEGETAKVSVRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKIHDKYIKQIEDM 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ARTCA (Ribosome-recycling factor OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 61/146 (41.78%), Postives = 99/146 (67.81%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +NP + +++ V+YYGSP  L+ +A    PD+ ++LI P+DK++L+ IE+A+  S++G  P+NDG VIR+T+P+LT ERRKE  K+V  + E+ KV++RNIRR A +A ++L K+ +  ED       +L  LT  ++  ID + K+
Sbjct:   32 ANPGLYNRVLVDYYGSPTPLQQLASFAIPDARTILITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAKVSIRNIRRKAKEALDRLVKDGEAGEDEGTRAEKELDGLTKAHVDGIDELLKR 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBVY (Ribosome-recycling factor OS=Vibrio vulnificus (strain YJ016) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++L  I V+YYG+   L  +A +   D+ +L I  +DK   + +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V  +AE G+VAVRNIRRDA    + L KEK++SED  +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLSGISVDYYGAATPLTQVANVIAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANSDLKALLKEKEISEDEDRKAQDEIQKLTDAAVKKIDDV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBHB (Ribosome-recycling factor OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 66/143 (46.15%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++L  I VEYYG+P  L  +A +   D+ +L I  +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE  +VAVRNIRRDA    + L K+K++SED  +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGSRVAVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SACEN (Ribosome-recycling factor OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/145 (42.76%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NPAM   I V+YYGSP  L  +A I+ P++  ++I+PYD S L ++EKAI  SDLG+ P+NDG++IR+++PQ+T ERRKE+ K+   + EEG++ VR IRR   +  +++ K+ +  ED       +L+ LT  Y+ +ID + K
Sbjct:   32 ANPAMFSGIVVDYYGSPTPLNQLASISVPEARLVVIKPYDASQLGAMEKAIRDSDLGVNPSNDGQLIRVSIPQMTEERRKEMVKLAKHKGEEGRITVRGIRRKVKEEIDRIVKDGEAGEDEGTRGEKELENLTHRYVAQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RALPJ (Ribosome-recycling factor OS=Ralstonia pickettii (strain 12J) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 61/143 (42.66%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K  ++++EKAI  +DLG+ P   G++IR+  P LT ERRKEL+KVV  + E+ KVAVRN+RRDA +  +KL K+K +SED+ +    ++QKLTD+++ +ID +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIGVQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKVAVRNLRRDANEQLKKLVKDKAISEDDERRGGDEVQKLTDKFVAEIDKL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYXXD (Ribosome-recycling factor OS=Myxococcus xanthus (strain DK 1622) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 63/143 (44.06%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  213 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 641
            A+L+ + V+YYG+P  L  +A +N P+   + I+P++KS LK IEKA+  ++LG+ P NDGE+IRL  P LT ERRK+++K V  + EE KV +RN+RRDA +  +   K+KK++ED+ K ++  +QK TD  + ++D I K+
Sbjct:   35 AILEGVRVDYYGTPTPLSGVASVNAPEPRLITIKPWEKSVLKDIEKALREANLGINPMNDGEMIRLPFPPLTEERRKDIAKQVKTKGEEFKVTIRNLRRDANEVLKTQLKDKKITEDDHKRITEVVQKQTDAGITQVDEIVKK 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCSS (Ribosome-recycling factor OS=Mycobacterium sp. (strain MCS) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I V+YYG+   +  ++ IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T  Y  +ID + K
Sbjct:   32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCSK (Ribosome-recycling factor OS=Mycobacterium sp. (strain KMS) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I V+YYG+   +  ++ IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T  Y  +ID + K
Sbjct:   32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BACV81.425e-3047.48Ribosome-recycling factor OS=Bacteroides vulgatus ... [more]
RRF_BACTN1.425e-3046.76Ribosome-recycling factor OS=Bacteroides thetaiota... [more]
RRF_ARTCA1.425e-3041.78Ribosome-recycling factor OS=Arthrobacter chloroph... [more]
RRF_VIBVY1.861e-3046.85Ribosome-recycling factor OS=Vibrio vulnificus (st... [more]
RRF_VIBHB1.861e-3046.15Ribosome-recycling factor OS=Vibrio harveyi (strai... [more]
RRF_SACEN1.861e-3042.76Ribosome-recycling factor OS=Saccharopolyspora ery... [more]
RRF_RALPJ1.861e-3042.66Ribosome-recycling factor OS=Ralstonia pickettii (... [more]
RRF_MYXXD1.861e-3044.06Ribosome-recycling factor OS=Myxococcus xanthus (s... [more]
RRF_MYCSS1.861e-3041.38Ribosome-recycling factor OS=Mycobacterium sp. (st... [more]
RRF_MYCSK1.861e-3041.38Ribosome-recycling factor OS=Mycobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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