CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACV8 (Ribosome-recycling factor OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 66/139 (47.48%), Postives = 97/139 (69.78%), Query Frame = -2 Query: 222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638 +LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS + IEKAI+ SDLG+TP N+GE+IRL +P LT ERRK+L+K + E KV++RN RRDA+ +K KE + ED K+ + LQK+ D+Y+ KI+ + Sbjct: 38 LLDGIRVDSYGSMVPISNVAAVTTPDARSIAIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAKVSIRNARRDAIDTLKKAVKE-GMPEDEQKNAEAKLQKVHDKYIAKIEEL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BACTN (Ribosome-recycling factor OS=Bacteroides thetaiotaomicron GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 65/139 (46.76%), Postives = 100/139 (71.94%), Query Frame = -2 Query: 222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638 +LD I V+ YGS V + ++A ++TPD+ S+ I+P+DKS ++IEKAI+ SDLG+ P N+GEVIR+ +P LT ERR++L+K + E KV+VRN RRD + A +K K+ L+ED K+ + LQK+ D+Y+K+I+ + Sbjct: 38 LLDGIRVDSYGSMVPISNVAALSTPDARSITIKPWDKSMFRAIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRRQLAKQCKAEGETAKVSVRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKIHDKYIKQIEDM 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ARTCA (Ribosome-recycling factor OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 61/146 (41.78%), Postives = 99/146 (67.81%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 +NP + +++ V+YYGSP L+ +A PD+ ++LI P+DK++L+ IE+A+ S++G P+NDG VIR+T+P+LT ERRKE K+V + E+ KV++RNIRR A +A ++L K+ + ED +L LT ++ ID + K+ Sbjct: 32 ANPGLYNRVLVDYYGSPTPLQQLASFAIPDARTILITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAKVSIRNIRRKAKEALDRLVKDGEAGEDEGTRAEKELDGLTKAHVDGIDELLKR 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBVY (Ribosome-recycling factor OS=Vibrio vulnificus (strain YJ016) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++L I V+YYG+ L +A + D+ +L I +DK + +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V +AE G+VAVRNIRRDA + L KEK++SED + ++QKLTD +KKID + Sbjct: 32 AHPSLLSGISVDYYGAATPLTQVANVIAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANSDLKALLKEKEISEDEDRKAQDEIQKLTDAAVKKIDDV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBHB (Ribosome-recycling factor OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 66/143 (46.15%), Postives = 96/143 (67.13%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++L I VEYYG+P L +A + D+ +L I +DK + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V +AE +VAVRNIRRDA + L K+K++SED + ++QKLTD +KKID + Sbjct: 32 AHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGSRVAVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SACEN (Ribosome-recycling factor OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 62/145 (42.76%), Postives = 97/145 (66.90%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NPAM I V+YYGSP L +A I+ P++ ++I+PYD S L ++EKAI SDLG+ P+NDG++IR+++PQ+T ERRKE+ K+ + EEG++ VR IRR + +++ K+ + ED +L+ LT Y+ +ID + K Sbjct: 32 ANPAMFSGIVVDYYGSPTPLNQLASISVPEARLVVIKPYDASQLGAMEKAIRDSDLGVNPSNDGQLIRVSIPQMTEERRKEMVKLAKHKGEEGRITVRGIRRKVKEEIDRIVKDGEAGEDEGTRGEKELENLTHRYVAQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RALPJ (Ribosome-recycling factor OS=Ralstonia pickettii (strain 12J) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 61/143 (42.66%), Postives = 102/143 (71.33%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K ++++EKAI +DLG+ P G++IR+ P LT ERRKEL+KVV + E+ KVAVRN+RRDA + +KL K+K +SED+ + ++QKLTD+++ +ID + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIGVQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKVAVRNLRRDANEQLKKLVKDKAISEDDERRGGDEVQKLTDKFVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYXXD (Ribosome-recycling factor OS=Myxococcus xanthus (strain DK 1622) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 63/143 (44.06%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 213 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 641 A+L+ + V+YYG+P L +A +N P+ + I+P++KS LK IEKA+ ++LG+ P NDGE+IRL P LT ERRK+++K V + EE KV +RN+RRDA + + K+KK++ED+ K ++ +QK TD + ++D I K+ Sbjct: 35 AILEGVRVDYYGTPTPLSGVASVNAPEPRLITIKPWEKSVLKDIEKALREANLGINPMNDGEMIRLPFPPLTEERRKDIAKQVKTKGEEFKVTIRNLRRDANEVLKTQLKDKKITEDDHKRITEVVQKQTDAGITQVDEIVKK 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCSS (Ribosome-recycling factor OS=Mycobacterium sp. (strain MCS) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M +I V+YYG+ + ++ IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T Y +ID + K Sbjct: 32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCSK (Ribosome-recycling factor OS=Mycobacterium sp. (strain KMS) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M +I V+YYG+ + ++ IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T Y +ID + K Sbjct: 32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |