Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_BACV8 (Ribosome-recycling factor OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=frr PE=3 SV=1)
HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 66/139 (47.48%), Postives = 97/139 (69.78%), Query Frame = -2
Query: 222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638
+LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS + IEKAI+ SDLG+TP N+GE+IRL +P LT ERRK+L+K + E KV++RN RRDA+ +K KE + ED K+ + LQK+ D+Y+ KI+ +
Sbjct: 38 LLDGIRVDSYGSMVPISNVAAVTTPDARSIAIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAKVSIRNARRDAIDTLKKAVKE-GMPEDEQKNAEAKLQKVHDKYIAKIEEL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_BACTN (Ribosome-recycling factor OS=Bacteroides thetaiotaomicron GN=frr PE=3 SV=1)
HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 65/139 (46.76%), Postives = 100/139 (71.94%), Query Frame = -2
Query: 222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638
+LD I V+ YGS V + ++A ++TPD+ S+ I+P+DKS ++IEKAI+ SDLG+ P N+GEVIR+ +P LT ERR++L+K + E KV+VRN RRD + A +K K+ L+ED K+ + LQK+ D+Y+K+I+ +
Sbjct: 38 LLDGIRVDSYGSMVPISNVAALSTPDARSITIKPWDKSMFRAIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRRQLAKQCKAEGETAKVSVRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKIHDKYIKQIEDM 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_ARTCA (Ribosome-recycling factor OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=frr PE=3 SV=1)
HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 61/146 (41.78%), Postives = 99/146 (67.81%), Query Frame = -2
Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
+NP + +++ V+YYGSP L+ +A PD+ ++LI P+DK++L+ IE+A+ S++G P+NDG VIR+T+P+LT ERRKE K+V + E+ KV++RNIRR A +A ++L K+ + ED +L LT ++ ID + K+
Sbjct: 32 ANPGLYNRVLVDYYGSPTPLQQLASFAIPDARTILITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAKVSIRNIRRKAKEALDRLVKDGEAGEDEGTRAEKELDGLTKAHVDGIDELLKR 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_VIBVY (Ribosome-recycling factor OS=Vibrio vulnificus (strain YJ016) GN=frr PE=3 SV=1)
HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
++P++L I V+YYG+ L +A + D+ +L I +DK + +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V +AE G+VAVRNIRRDA + L KEK++SED + ++QKLTD +KKID +
Sbjct: 32 AHPSLLSGISVDYYGAATPLTQVANVIAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANSDLKALLKEKEISEDEDRKAQDEIQKLTDAAVKKIDDV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_VIBHB (Ribosome-recycling factor OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=frr PE=3 SV=1)
HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 66/143 (46.15%), Postives = 96/143 (67.13%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
++P++L I VEYYG+P L +A + D+ +L I +DK + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V +AE +VAVRNIRRDA + L K+K++SED + ++QKLTD +KKID +
Sbjct: 32 AHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGSRVAVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_SACEN (Ribosome-recycling factor OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=frr PE=3 SV=1)
HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/145 (42.76%), Postives = 97/145 (66.90%), Query Frame = -2
Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
+NPAM I V+YYGSP L +A I+ P++ ++I+PYD S L ++EKAI SDLG+ P+NDG++IR+++PQ+T ERRKE+ K+ + EEG++ VR IRR + +++ K+ + ED +L+ LT Y+ +ID + K
Sbjct: 32 ANPAMFSGIVVDYYGSPTPLNQLASISVPEARLVVIKPYDASQLGAMEKAIRDSDLGVNPSNDGQLIRVSIPQMTEERRKEMVKLAKHKGEEGRITVRGIRRKVKEEIDRIVKDGEAGEDEGTRGEKELENLTHRYVAQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_RALPJ (Ribosome-recycling factor OS=Ralstonia pickettii (strain 12J) GN=frr PE=3 SV=1)
HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 61/143 (42.66%), Postives = 102/143 (71.33%), Query Frame = -2
Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
++ +LD ++V+YYGS V + +A + D+ ++ +QP++K ++++EKAI +DLG+ P G++IR+ P LT ERRKEL+KVV + E+ KVAVRN+RRDA + +KL K+K +SED+ + ++QKLTD+++ +ID +
Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIGVQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKVAVRNLRRDANEQLKKLVKDKAISEDDERRGGDEVQKLTDKFVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_MYXXD (Ribosome-recycling factor OS=Myxococcus xanthus (strain DK 1622) GN=frr PE=3 SV=1)
HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 63/143 (44.06%), Postives = 99/143 (69.23%), Query Frame = -2
Query: 213 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 641
A+L+ + V+YYG+P L +A +N P+ + I+P++KS LK IEKA+ ++LG+ P NDGE+IRL P LT ERRK+++K V + EE KV +RN+RRDA + + K+KK++ED+ K ++ +QK TD + ++D I K+
Sbjct: 35 AILEGVRVDYYGTPTPLSGVASVNAPEPRLITIKPWEKSVLKDIEKALREANLGINPMNDGEMIRLPFPPLTEERRKDIAKQVKTKGEEFKVTIRNLRRDANEVLKTQLKDKKITEDDHKRITEVVQKQTDAGITQVDEIVKK 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_MYCSS (Ribosome-recycling factor OS=Mycobacterium sp. (strain MCS) GN=frr PE=3 SV=1)
HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2
Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
+NP M +I V+YYG+ + ++ IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T Y +ID + K
Sbjct: 32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match:
RRF_MYCSK (Ribosome-recycling factor OS=Mycobacterium sp. (strain KMS) GN=frr PE=3 SV=1)
HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2
Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
+NP M +I V+YYG+ + ++ IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T Y +ID + K
Sbjct: 32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 500
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 1.42e-30 / Id = 47.48 Expect = 1.42e-30 / Id = 46.76 Expect = 1.42e-30 / Id = 41.78 Expect = 1.86e-30 / Id = 46.85 Expect = 1.86e-30 / Id = 46.15 Expect = 1.86e-30 / Id = 42.76 Expect = 1.86e-30 / Id = 42.66 Expect = 1.86e-30 / Id = 44.06 Expect = 1.86e-30 / Id = 41.38 Expect = 1.86e-30 / Id = 41.38 Sequence RRF_BACV8 RRF_BACTN RRF_ARTCA RRF_VIBVY RRF_VIBHB RRF_SACEN RRF_RALPJ RRF_MYXXD RRF_MYCSS RRF_MYCSK
Match Name E-value Identity Description
RRF_BACV8 1.425e-30 47.48 Ribosome-recycling factor OS=Bacteroides vulgatus ... [more]
RRF_BACTN 1.425e-30 46.76 Ribosome-recycling factor OS=Bacteroides thetaiota... [more]
RRF_ARTCA 1.425e-30 41.78 Ribosome-recycling factor OS=Arthrobacter chloroph... [more]
RRF_VIBVY 1.861e-30 46.85 Ribosome-recycling factor OS=Vibrio vulnificus (st... [more]
RRF_VIBHB 1.861e-30 46.15 Ribosome-recycling factor OS=Vibrio harveyi (strai... [more]
RRF_SACEN 1.861e-30 42.76 Ribosome-recycling factor OS=Saccharopolyspora ery... [more]
RRF_RALPJ 1.861e-30 42.66 Ribosome-recycling factor OS=Ralstonia pickettii (... [more]
RRF_MYXXD 1.861e-30 44.06 Ribosome-recycling factor OS=Myxococcus xanthus (s... [more]
RRF_MYCSS 1.861e-30 41.38 Ribosome-recycling factor OS=Mycobacterium sp. (st... [more]
RRF_MYCSK 1.861e-30 41.38 Ribosome-recycling factor OS=Mycobacterium sp. (st... [more]
Pages back to top