CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCSJ (Ribosome-recycling factor OS=Mycobacterium sp. (strain JLS) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I V+YYG+   +  ++ IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T  Y  +ID + K
Sbjct:   32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HERAR (Ribosome-recycling factor OS=Herminiimonas arsenicoxydans GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 60/143 (41.96%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD + VEYYG+P +L  +A +   D+ ++ +QP++K  +  +EKAI  +DLG+ P   GE+IR+  P LT ERRKE+ K+V  +AE+ K+A+RNIRRDA +  +KL K+K  SED+ +    ++QKLTD+++ ++D +
Sbjct:   33 AHTGILDHVMVEYYGNPTNLTQVANVTLIDARTIGVQPFEKKMVAVVEKAIRDADLGLNPATQGEMIRVPTPPLTEERRKEMVKLVKSEAEDAKIAIRNIRRDANETLKKLLKDKACSEDDERRAQDEIQKLTDKFVLEVDKL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPJ (Ribosome-recycling factor OS=Helicobacter pylori J99 GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = -2
Query:  216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE++I  +++G+ PNNDGE I+L  P +T+E+RK ++K      E+ KVAVRN R+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:   36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPG (Ribosome-recycling factor OS=Helicobacter pylori (strain G27) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = -2
Query:  216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE++I  +++G+ PNNDGE I+L  P +T+E+RK ++K      E+ KVAVRN R+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:   36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_FERNB (Ribosome-recycling factor OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 63/146 (43.15%), Postives = 105/146 (71.92%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            + PA+L++I+++YYG P  +  +AQ+ T +   L+I+P++++ L  IEKAI++SDLG+TP NDG V+R+  P  T+E+R++  K   +  EEGKVAVRNIRRD LK  +  +K  ++SED+ K L  ++Q LTD+Y+ ++D ++++
Sbjct:   32 ATPAVLEEIKIDYYGVPTPVLQVAQVTT-EERQLVIKPWERNLLNVIEKAILASDLGLTPVNDGTVVRINFPTPTTEQRQKWVKKAKEIVEEGKVAVRNIRRDILKDIKDKKKAGEISEDDEKRLEKEIQNLTDKYVAELDKLFEK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ERYLH (Ribosome-recycling factor OS=Erythrobacter litoralis (strain HTCC2594) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 58/142 (40.85%), Postives = 99/142 (69.72%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            +N ++LD + VE YG+ + L  +A +N P+   L +Q +DK+++ ++EK I  ++LG+ P  DG+ +RL +P LT ERRKEL+K+  + AE+ K+A+RN+RRD ++  +  +K K +SED+ K +  ++QKLTD+Y+ + DS
Sbjct:   32 ANTSLLDPVVVEVYGAMMPLNQVATVNAPEPRMLAVQVWDKANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQYAEKAKIAIRNVRRDGMEDLKADEKAKDISEDDRKRMEDEVQKLTDKYVAEADS 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORK4 (Ribosome-recycling factor OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 58/143 (40.56%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP+M + ++ EYYG    +  +A I+ P+   LLI+PY+ S + +IE AI +SDLG+ P NDG+V+R+T+PQLT ERRKE+ ++   + E+ ++A+RNIRR  +   +++QK+ +  ED V+    +L K T EY+ ++D +
Sbjct:   32 ANPSMFNGVQAEYYGVMTPITQMATISVPEPRMLLIKPYEPSIMNAIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVRLAKSKGEDARIAIRNIRRKGMDELKRIQKDGEAGEDEVQAAEKELDKTTHEYVSQVDKL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBPA (Ribosome-recycling factor OS=Vibrio parahaemolyticus GN=frr PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 66/143 (46.15%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++L  I VEYYG+   L  +A +   D+ +L I  +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G+VAVRNIRRDA    + L K+K++SED  +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBCM (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 64/143 (44.76%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V  +AE G+VAVRNIRRDA    + L K+K++SED+ +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBCH (Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 64/143 (44.76%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V  +AE G+VAVRNIRRDA    + L K+K++SED+ +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_MYCSJ1.861e-3041.38Ribosome-recycling factor OS=Mycobacterium sp. (st... [more]
RRF_HERAR1.861e-3041.96Ribosome-recycling factor OS=Herminiimonas arsenic... [more]
RRF_HELPJ1.861e-3043.97Ribosome-recycling factor OS=Helicobacter pylori J... [more]
RRF_HELPG1.861e-3043.97Ribosome-recycling factor OS=Helicobacter pylori (... [more]
RRF_FERNB1.861e-3043.15Ribosome-recycling factor OS=Fervidobacterium nodo... [more]
RRF_ERYLH1.861e-3040.85Ribosome-recycling factor OS=Erythrobacter litoral... [more]
RRF_CORK41.861e-3040.56Ribosome-recycling factor OS=Corynebacterium kropp... [more]
RRF_VIBPA2.430e-3046.15Ribosome-recycling factor OS=Vibrio parahaemolytic... [more]
RRF_VIBCM2.430e-3044.76Ribosome-recycling factor OS=Vibrio cholerae serot... [more]
RRF_VIBCH2.430e-3044.76Ribosome-recycling factor OS=Vibrio cholerae GN=fr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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