CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCSJ (Ribosome-recycling factor OS=Mycobacterium sp. (strain JLS) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M +I V+YYG+ + ++ IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T Y +ID + K Sbjct: 32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HERAR (Ribosome-recycling factor OS=Herminiimonas arsenicoxydans GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 60/143 (41.96%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD + VEYYG+P +L +A + D+ ++ +QP++K + +EKAI +DLG+ P GE+IR+ P LT ERRKE+ K+V +AE+ K+A+RNIRRDA + +KL K+K SED+ + ++QKLTD+++ ++D + Sbjct: 33 AHTGILDHVMVEYYGNPTNLTQVANVTLIDARTIGVQPFEKKMVAVVEKAIRDADLGLNPATQGEMIRVPTPPLTEERRKEMVKLVKSEAEDAKIAIRNIRRDANETLKKLLKDKACSEDDERRAQDEIQKLTDKFVLEVDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPJ (Ribosome-recycling factor OS=Helicobacter pylori J99 GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = -2 Query: 216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +T+E+RK ++K E+ KVAVRN R+DA +KL+K+K++SED K +QK+TDE +KKID K Sbjct: 36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPG (Ribosome-recycling factor OS=Helicobacter pylori (strain G27) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = -2 Query: 216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +T+E+RK ++K E+ KVAVRN R+DA +KL+K+K++SED K +QK+TDE +KKID K Sbjct: 36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_FERNB (Ribosome-recycling factor OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 63/146 (43.15%), Postives = 105/146 (71.92%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 + PA+L++I+++YYG P + +AQ+ T + L+I+P++++ L IEKAI++SDLG+TP NDG V+R+ P T+E+R++ K + EEGKVAVRNIRRD LK + +K ++SED+ K L ++Q LTD+Y+ ++D ++++ Sbjct: 32 ATPAVLEEIKIDYYGVPTPVLQVAQVTT-EERQLVIKPWERNLLNVIEKAILASDLGLTPVNDGTVVRINFPTPTTEQRQKWVKKAKEIVEEGKVAVRNIRRDILKDIKDKKKAGEISEDDEKRLEKEIQNLTDKYVAELDKLFEK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ERYLH (Ribosome-recycling factor OS=Erythrobacter litoralis (strain HTCC2594) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 58/142 (40.85%), Postives = 99/142 (69.72%), Query Frame = -2 Query: 225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650 +N ++LD + VE YG+ + L +A +N P+ L +Q +DK+++ ++EK I ++LG+ P DG+ +RL +P LT ERRKEL+K+ + AE+ K+A+RN+RRD ++ + +K K +SED+ K + ++QKLTD+Y+ + DS Sbjct: 32 ANTSLLDPVVVEVYGAMMPLNQVATVNAPEPRMLAVQVWDKANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQYAEKAKIAIRNVRRDGMEDLKADEKAKDISEDDRKRMEDEVQKLTDKYVAEADS 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORK4 (Ribosome-recycling factor OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 58/143 (40.56%), Postives = 97/143 (67.83%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP+M + ++ EYYG + +A I+ P+ LLI+PY+ S + +IE AI +SDLG+ P NDG+V+R+T+PQLT ERRKE+ ++ + E+ ++A+RNIRR + +++QK+ + ED V+ +L K T EY+ ++D + Sbjct: 32 ANPSMFNGVQAEYYGVMTPITQMATISVPEPRMLLIKPYEPSIMNAIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVRLAKSKGEDARIAIRNIRRKGMDELKRIQKDGEAGEDEVQAAEKELDKTTHEYVSQVDKL 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBPA (Ribosome-recycling factor OS=Vibrio parahaemolyticus GN=frr PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 66/143 (46.15%), Postives = 96/143 (67.13%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++L I VEYYG+ L +A + D+ +L I +DK + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V +AE G+VAVRNIRRDA + L K+K++SED + ++QKLTD +KKID + Sbjct: 32 AHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBCM (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 64/143 (44.76%), Postives = 98/143 (68.53%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++L I V+YYG+P L +A + D+ +L I +D+ + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V +AE G+VAVRNIRRDA + L K+K++SED+ + ++QKLTD +KKID + Sbjct: 32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBCH (Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 64/143 (44.76%), Postives = 98/143 (68.53%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++L I V+YYG+P L +A + D+ +L I +D+ + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V +AE G+VAVRNIRRDA + L K+K++SED+ + ++QKLTD +KKID + Sbjct: 32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |