CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBC3 (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 64/143 (44.76%), Postives = 98/143 (68.53%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++L I V+YYG+P L +A + D+ +L I +D+ + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V +AE G+VAVRNIRRDA + L K+K++SED+ + ++QKLTD +KKID + Sbjct: 32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RHOFD (Ribosome-recycling factor OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 62/143 (43.36%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPA+LD + V+YYG+ + + +A ++ D+ ++ +QP++K IEKAI SDLG+ P++ G++IR+ +P ++ ERRKELSKVV + E K+A+RN+RRDA +A K K+K SED K +D+QK+TD ++ ID + Sbjct: 33 ANPALLDTVHVDYYGAMLPISQVANVSLLDARTISVQPWEKGMGAKIEKAIRDSDLGLNPSSMGDLIRVPMPAMSEERRKELSKVVRGEGEGAKIAIRNLRRDANEAIRKAVKDKLASEDEQKRCETDIQKVTDRHVIVIDQL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPS (Ribosome-recycling factor OS=Helicobacter pylori (strain Shi470) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = -2 Query: 216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +T+E+RK ++K E+ KVAVRNIR+DA +KL+K+K++SED K +QK+TDE +K ID K Sbjct: 36 ILDHIKVDYYGTPTTLNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_GEOSM (Ribosome-recycling factor OS=Geobacter sp. (strain M21) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = -2 Query: 222 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 641 ++LD I+++ YG+ L +A + P++ ++ I P+D + IEKAI++S+LG+ P NDG++IRL LP LT ERRK++ K + + AEE KVA+RNIRRDA+ +KL+K+K +SED +K D+Q T+ ++ K+D + Sbjct: 35 SLLDDIKIDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLVLPPLTEERRKDIVKQLKRDAEEAKVALRNIRRDAIDQLKKLEKDKSISEDELKRAEKDVQDSTNSHVAKVDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DIAST (Ribosome-recycling factor OS=Diaphorobacter sp. (strain TPSY) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP +LD I VEYYGS V L +A + D+ ++ +QP++K+ IEKAI SDLG+ P + G++IR+ +P ++ ERRKE++K+ + E KVA+RN+RRDA + +KL K+K SED+ K +D+QK TD+++ +ID++ Sbjct: 33 ANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDAL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BRAJA (Ribosome-recycling factor OS=Bradyrhizobium japonicum GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 63/143 (44.06%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +MLD ++VE YGS + L +A ++ P+ + +Q +DKS +K++EKAIV S+LG++P +G+V+RL +P+L ERRKEL KV K AE KVA R++RRD L +KL+K ++SED+ K + ++QK+TD + +ID + Sbjct: 35 ASASMLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVRRDGLDVLKKLEKNHEMSEDDQKRHADEVQKVTDGTIAEIDQL 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORRA (Ribosome-recycling factor OS=Borrelia recurrentis (strain A1) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 219 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 647 N A+ DK+ V+YYG L +A I+ P++ ++IQP+D+S L IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K K AE+ K+A RNIR + +K +K+ +++ED+++ + D+Q+ T+ Y+KKID I+ Sbjct: 32 NSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIF 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORDL (Ribosome-recycling factor OS=Borrelia duttonii (strain Ly) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 219 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 647 N A+ DK+ V+YYG L +A I+ P++ ++IQP+D+S L IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K K AE+ K+A RNIR + +K +K+ +++ED+++ + D+Q+ T+ Y+KKID I+ Sbjct: 32 NSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIF 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ACISJ (Ribosome-recycling factor OS=Acidovorax sp. (strain JS42) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP +LD I VEYYGS V L +A + D+ ++ +QP++K+ IEKAI SDLG+ P + G++IR+ +P ++ ERRKE++K+ + E KVA+RN+RRDA + +KL K+K SED+ K +D+QK TD+++ +ID++ Sbjct: 33 ANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDAL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCPA (Ribosome-recycling factor OS=Mycobacterium paratuberculosis GN=frr PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30 Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M +I ++YYG+ + +A IN P++ ++I+PY+ S + +IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVK 176 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |