CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBC3 (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 64/143 (44.76%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V  +AE G+VAVRNIRRDA    + L K+K++SED+ +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RHOFD (Ribosome-recycling factor OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 62/143 (43.36%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPA+LD + V+YYG+ + +  +A ++  D+ ++ +QP++K     IEKAI  SDLG+ P++ G++IR+ +P ++ ERRKELSKVV  + E  K+A+RN+RRDA +A  K  K+K  SED  K   +D+QK+TD ++  ID +
Sbjct:   33 ANPALLDTVHVDYYGAMLPISQVANVSLLDARTISVQPWEKGMGAKIEKAIRDSDLGLNPSSMGDLIRVPMPAMSEERRKELSKVVRGEGEGAKIAIRNLRRDANEAIRKAVKDKLASEDEQKRCETDIQKVTDRHVIVIDQL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPS (Ribosome-recycling factor OS=Helicobacter pylori (strain Shi470) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = -2
Query:  216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE++I  +++G+ PNNDGE I+L  P +T+E+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +K ID   K
Sbjct:   36 ILDHIKVDYYGTPTTLNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_GEOSM (Ribosome-recycling factor OS=Geobacter sp. (strain M21) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = -2
Query:  222 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 641
            ++LD I+++ YG+   L  +A +  P++ ++ I P+D   +  IEKAI++S+LG+ P NDG++IRL LP LT ERRK++ K + + AEE KVA+RNIRRDA+   +KL+K+K +SED +K    D+Q  T+ ++ K+D +
Sbjct:   35 SLLDDIKIDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLVLPPLTEERRKDIVKQLKRDAEEAKVALRNIRRDAIDQLKKLEKDKSISEDELKRAEKDVQDSTNSHVAKVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DIAST (Ribosome-recycling factor OS=Diaphorobacter sp. (strain TPSY) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP +LD I VEYYGS V L  +A +   D+ ++ +QP++K+    IEKAI  SDLG+ P + G++IR+ +P ++ ERRKE++K+   + E  KVA+RN+RRDA +  +KL K+K  SED+ K   +D+QK TD+++ +ID++
Sbjct:   33 ANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDAL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BRAJA (Ribosome-recycling factor OS=Bradyrhizobium japonicum GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 63/143 (44.06%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++ +MLD ++VE YGS + L  +A ++ P+   + +Q +DKS +K++EKAIV S+LG++P  +G+V+RL +P+L  ERRKEL KV  K AE  KVA R++RRD L   +KL+K  ++SED+ K  + ++QK+TD  + +ID +
Sbjct:   35 ASASMLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVRRDGLDVLKKLEKNHEMSEDDQKRHADEVQKVTDGTIAEIDQL 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORRA (Ribosome-recycling factor OS=Borrelia recurrentis (strain A1) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  219 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 647
            N A+ DK+ V+YYG    L  +A I+ P++  ++IQP+D+S L  IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K   K AE+ K+A RNIR +     +K +K+ +++ED+++ +  D+Q+ T+ Y+KKID I+
Sbjct:   32 NSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIF 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORDL (Ribosome-recycling factor OS=Borrelia duttonii (strain Ly) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  219 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 647
            N A+ DK+ V+YYG    L  +A I+ P++  ++IQP+D+S L  IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K   K AE+ K+A RNIR +     +K +K+ +++ED+++ +  D+Q+ T+ Y+KKID I+
Sbjct:   32 NSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIF 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ACISJ (Ribosome-recycling factor OS=Acidovorax sp. (strain JS42) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP +LD I VEYYGS V L  +A +   D+ ++ +QP++K+    IEKAI  SDLG+ P + G++IR+ +P ++ ERRKE++K+   + E  KVA+RN+RRDA +  +KL K+K  SED+ K   +D+QK TD+++ +ID++
Sbjct:   33 ANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDAL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCPA (Ribosome-recycling factor OS=Mycobacterium paratuberculosis GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ S + +IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVK 176          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_VIBC32.430e-3044.76Ribosome-recycling factor OS=Vibrio cholerae serot... [more]
RRF_RHOFD2.430e-3043.36Ribosome-recycling factor OS=Rhodoferax ferrireduc... [more]
RRF_HELPS2.430e-3043.97Ribosome-recycling factor OS=Helicobacter pylori (... [more]
RRF_GEOSM2.430e-3043.57Ribosome-recycling factor OS=Geobacter sp. (strain... [more]
RRF_DIAST2.430e-3044.06Ribosome-recycling factor OS=Diaphorobacter sp. (s... [more]
RRF_BRAJA2.430e-3044.06Ribosome-recycling factor OS=Bradyrhizobium japoni... [more]
RRF_BORRA2.430e-3043.36Ribosome-recycling factor OS=Borrelia recurrentis ... [more]
RRF_BORDL2.430e-3043.36Ribosome-recycling factor OS=Borrelia duttonii (st... [more]
RRF_ACISJ2.430e-3044.06Ribosome-recycling factor OS=Acidovorax sp. (strai... [more]
RRF_MYCPA3.174e-3042.07Ribosome-recycling factor OS=Mycobacterium paratub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
back to top