CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCGI (Ribosome-recycling factor OS=Mycobacterium gilvum (strain PYR-GCK) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 57/145 (39.31%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M ++I ++YYG+   +  ++ IN P++  ++I+PY+ + L+ IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K    + E+ KV++RNIRR A++   +++K+    ED+V     DL K T +Y  ++D + K
Sbjct:   32 ANPGMFNRIHIDYYGASTPITQLSSINVPEARMVVIKPYEANQLRPIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKSKGEDAKVSIRNIRRKAMEELARIKKDGDAGEDDVTRAEKDLDKSTHQYTSQVDDLVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCA1 (Ribosome-recycling factor OS=Mycobacterium avium (strain 104) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ S + +IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_GEOBB (Ribosome-recycling factor OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 61/143 (42.66%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++ ++LD I+V+ YG+   L  +A +  P++ ++ I P+D   +  IEKAI++S+LG+ P NDG++IRLTLP LT ERRK++ K + + AE+ KVA+RNIRRDA+   +KL+K+K +SED  K    ++Q  T+ ++ K+D +
Sbjct:   32 ASTSLLDDIKVDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEDAKVALRNIRRDAIDQLKKLEKDKSISEDEQKRAEKEVQDFTNSHVAKVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CHLSY (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 65/143 (45.45%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++ A+++ + VE YG  + L  +A I+ P+   ++IQPYD + +K+IEKAI  SDLG+ P+NDG VIRL +P LT ERR+EL K+V  + EE K++VRN RRDA+   +KL+ EK +SED +      +Q+LTD   +++D I
Sbjct:   32 ASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CHLAA (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 65/143 (45.45%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++ A+++ + VE YG  + L  +A I+ P+   ++IQPYD + +K+IEKAI  SDLG+ P+NDG VIRL +P LT ERR+EL K+V  + EE K++VRN RRDA+   +KL+ EK +SED +      +Q+LTD   +++D I
Sbjct:   32 ASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CAMLR (Ribosome-recycling factor OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 63/144 (43.75%), Postives = 95/144 (65.97%), Query Frame = -2
Query:  216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647
            N  +LD + V+YYGS   L  +A +   D+S++ I P++K  LK+IE AI ++++G+ PNNDGE ++L  P +T E+R+E +K      E+ KVA+RNIR+DA  A +KL+K+K +SED  K    ++QK TD Y  KID + K
Sbjct:   33 NINILDHVHVDYYGSQTPLNQVATVLATDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENAKSAKAMGEKAKVAIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKQTDNYTTKIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBFM (Ribosome-recycling factor OS=Vibrio fischeri (strain MJ11) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 68/143 (47.55%), Postives = 95/143 (66.43%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++L  I VEYYG+   L  +A +   DS +L I  +DK     +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V  +AE G+VAVRNIRRDA    + L KEK++SED+ +    ++QKLTD  +K ID +
Sbjct:   32 AHPSLLSGISVEYYGAKTPLNQVANVVAEDSRTLAITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAENGRVAVRNIRRDANGDVKALLKEKEISEDDDRRAQDEIQKLTDAAVKSIDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RHOOB (Ribosome-recycling factor OS=Rhodococcus opacus (strain B4) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 59/145 (40.69%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M ++I ++YYG+   +  +A IN P++  ++++PY+ S L +IE AI +SDLG+ P+NDG +IR+++PQLT ERR+EL K    + E+ KV+VRN+RR A+    ++QK+ +  ED V     +L K T  Y+ ++D + K
Sbjct:   32 ANPGMFNRIGIDYYGAFTPITQLASINVPEARLVVVKPYEASQLNAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAKVSVRNVRRKAMDELSRIQKDGEAGEDEVGRAEKELDKTTARYVAQVDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCUA (Ribosome-recycling factor OS=Mycobacterium ulcerans (strain Agy99) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L +IE AI +SDLG+ P NDG +IR+ +PQLT ERR++L K    + EE +V+VRNIRR A++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCMM (Ribosome-recycling factor OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L +IE AI +SDLG+ P NDG +IR+ +PQLT ERR++L K    + EE +V+VRNIRR A++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVK 176          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_MYCGI3.174e-3039.31Ribosome-recycling factor OS=Mycobacterium gilvum ... [more]
RRF_MYCA13.174e-3042.07Ribosome-recycling factor OS=Mycobacterium avium (... [more]
RRF_GEOBB3.174e-3042.66Ribosome-recycling factor OS=Geobacter bemidjiensi... [more]
RRF_CHLSY3.174e-3045.45Ribosome-recycling factor OS=Chloroflexus aurantia... [more]
RRF_CHLAA3.174e-3045.45Ribosome-recycling factor OS=Chloroflexus aurantia... [more]
RRF_CAMLR3.174e-3043.75Ribosome-recycling factor OS=Campylobacter lari (s... [more]
RRF_VIBFM4.145e-3047.55Ribosome-recycling factor OS=Vibrio fischeri (stra... [more]
RRF_RHOOB4.145e-3040.69Ribosome-recycling factor OS=Rhodococcus opacus (s... [more]
RRF_MYCUA4.145e-3041.38Ribosome-recycling factor OS=Mycobacterium ulceran... [more]
RRF_MYCMM4.145e-3041.38Ribosome-recycling factor OS=Mycobacterium marinum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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