CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DESHY (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.166e-38
Identity = 78/143 (54.55%), Postives = 106/143 (74.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +VAVRNIRRD+    +KL+K+   SED VK    D+QK+TD+++K+I+ I
Sbjct:   32 ANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIERI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ANATD (Ribosome-recycling factor OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=frr PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.166e-38
Identity = 73/143 (51.05%), Postives = 106/143 (74.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP +LDK+ V+YYG P  +  +A I  P++  ++IQP++   LK IEKAI  SDLG+ P NDG+VIRL  P+LT ERRKEL K V K AE+ KVA+RNIRR+AL  Y+K++K  +++ED++KD   D+QKL D+Y+++I+ +
Sbjct:   31 ANPHILDKVMVDYYGVPTPIPQVASITVPEARMIVIQPWEARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKL 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRPM (Ribosome-recycling factor OS=Streptococcus pyogenes serotype M28 GN=frr PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.136e-38
Identity = 74/141 (52.48%), Postives = 106/141 (75.18%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            +N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K+ID
Sbjct:   32 ANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKVTDDAIKEID 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CLOAB (Ribosome-recycling factor OS=Clostridium acetobutylicum GN=frr PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.136e-38
Identity = 75/143 (52.45%), Postives = 106/143 (74.13%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPAMLD+IEV+YYG+   L  +A I+ P+S  L+IQP+DKS++KSIEKAI+ SDLG+ P+NDG  +RL +P+LT E RK + K V K  E+GKVA+R IRRDA    + L+K+  ++ED +K   +D+QK TD Y+K+ID +
Sbjct:   32 ANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGKVALRAIRRDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACDB (Ribosome-recycling factor OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=frr PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 76/143 (53.15%), Postives = 107/143 (74.83%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD++ VEYYG P  L  +A I  P+   L+I PYDKSSL  IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVRN+R++A+KA +K +K+ +++ED  + L  ++QK+TDE  KKID +
Sbjct:   32 ANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITPYDKSSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_EUBR3 (Ribosome-recycling factor OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=frr PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 72/142 (50.70%), Postives = 107/142 (75.35%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            +NP +LDK+ V+YYG+P  ++S+A ++ P+   + IQP++ S +K IEKAI  SD+G+ P NDG++IRL  P+LT ERRK+L+K + K+ EE KVAVRNIRRDA+ + +K  KE+ +SED +K L  D QKLTD+++ K+D+
Sbjct:   31 ANPHILDKLRVDYYGTPSPIQSVANVSVPEPRMIQIQPWEASMVKEIEKAINCSDIGINPTNDGKLIRLVFPELTEERRKDLAKDIKKKGEEAKVAVRNIRRDAIDSIKKTGKEEGISEDEIKGLEDDAQKLTDKFVAKVDA 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CLOPH (Ribosome-recycling factor OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=frr PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 70/143 (48.95%), Postives = 110/143 (76.92%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP +LDK+ V+YYG+P +++++A ++ P++  + IQP++   +K IEKAI++SDLG+TP+NDG+VIRL  P+LT ERRK+L K V K+AE  KVAVRN+RRDA  A +KL K  ++SED  K +  ++QK+TD+++ ++D +
Sbjct:   31 ANPHLLDKLRVDYYGTPSAIQAVANVSVPEARVIQIQPWEAKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKKKAENTKVAVRNVRRDANDAIKKLAKANEISEDEQKQIEDEIQKITDKFITEVDKV 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRU0 (Ribosome-recycling factor OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=frr PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.054e-38
Identity = 76/143 (53.15%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++LD+I+VEYYG P  L  +A I  P++  LLI P+DKSS+K IE+AI +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK TD+ +K ID +
Sbjct:   32 ANASLLDRIQVEYYGVPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENQKIAIRNIRRDAMDEAKKQEKNKEITEDELKALEKDIQKATDQAIKHIDGM 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRS7 (Ribosome-recycling factor OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=frr PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.054e-38
Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            +N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  KV++RNIRRDA+   +K +K K+++ED +K L  D+QK TDE +K+ID
Sbjct:   32 ANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKDIQKATDEAVKEID 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STRPZ (Ribosome-recycling factor OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=frr PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.054e-38
Identity = 74/141 (52.48%), Postives = 105/141 (74.47%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            +N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK TD+ +K+ID
Sbjct:   32 ANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEID 172          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_DESHY3.166e-3854.55Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_ANATD3.166e-3851.05Ribosome-recycling factor OS=Anaerocellum thermoph... [more]
RRF_STRPM4.136e-3852.48Ribosome-recycling factor OS=Streptococcus pyogene... [more]
RRF_CLOAB4.136e-3852.45Ribosome-recycling factor OS=Clostridium acetobuty... [more]
RRF_LACDB5.401e-3853.15Ribosome-recycling factor OS=Lactobacillus delbrue... [more]
RRF_EUBR35.401e-3850.70Ribosome-recycling factor OS=Eubacterium rectale (... [more]
RRF_CLOPH5.401e-3848.95Ribosome-recycling factor OS=Clostridium phytoferm... [more]
RRF_STRU07.054e-3853.15Ribosome-recycling factor OS=Streptococcus uberis ... [more]
RRF_STRS77.054e-3853.19Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STRPZ7.054e-3852.48Ribosome-recycling factor OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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