CF832536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_GEOKA (Ribosome-recycling factor OS=Geobacillus kaustophilus GN=frr PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.286e-39 Identity = 75/146 (51.37%), Postives = 114/146 (78.08%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440 +N +L+K+ V+YYG P + +A I+ P++ L+IQPYDKS++K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +E+ KVAVRNIRRDA +KL+K +++ED ++ + ++QKLTD+++ KID+I K+ Sbjct: 32 ANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVRNIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKE 177
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LISIN (Ribosome-recycling factor OS=Listeria innocua GN=frr PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.679e-39 Identity = 80/145 (55.17%), Postives = 109/145 (75.17%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +N +LD++ V+YYG+ + +A I+ P++ LLI PYDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVRNIRR+A + +KL+K ++ED+++ D+QKLTDE +K IDSI K Sbjct: 32 ANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PROM4 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9211) GN=frr PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39 Identity = 77/141 (54.61%), Postives = 108/141 (76.60%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425 +N +LD++ VEYYG+ LKS+A I+TPDS ++ IQP+D SSL IEK+I SDLG TPNNDG++IR+ +P LT ERRKE K+ +K AEEGKVA+RNIRRDA++ +K +KE ++SED +D ++QKLTD ++ +I+ Sbjct: 29 ANTSLLDRLTVEYYGADTPLKSLATISTPDSQTISIQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAIERIKKSEKESEISEDQSRDEQDNVQKLTDRFITEIE 169
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ALKMQ (Ribosome-recycling factor OS=Alkaliphilus metalliredigens (strain QYMF) GN=frr PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39 Identity = 74/143 (51.75%), Postives = 111/143 (77.62%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +NP MLD+I V+YYGS LK +A ++ P+ L+IQPYD S + IEKA++ SDLG+ P+NDG++IRL +PQLT ERRKEL+KVV + AEEG+VA+RN RRDA + +K++K+ +L+ED++K ++QK+TD++ K++D + Sbjct: 32 ANPSMLDRITVDYYGSITPLKQVASVSAPEPRLLIIQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKRVAEEGRVALRNGRRDANEQLKKMEKDSELTEDDLKQAQEEVQKITDKFNKQVDEM 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SYNWW (Ribosome-recycling factor OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=frr PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39 Identity = 80/143 (55.94%), Postives = 108/143 (75.52%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +NP ML+KI V+YYG P + +A I P++ L+IQP+DK+ + SIEKAI+ SDLG+ P+NDG VIRL +PQLT ERRKEL KV+ K+AEE +VAVRNIRRD+ + + +KEK +SED+ K D+QK TD ++K+IDSI Sbjct: 32 ANPAMLEKIMVDYYGQPTPINQLANITVPEARLLVIQPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKRAEEARVAVRNIRRDSNELLKSGEKEKLISEDDNKKGMDDIQKETDRHIKEIDSI 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACS1 (Ribosome-recycling factor OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=frr PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39 Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +N +L++I VEYYG+P L +AQI+ P++ LL+ PYDK+SLK+IE AI++SDLG+ P NDG IRL +PQLT ERRKEL+K V +E GKVAVRNIRRD + A +K QK L+ED+++DL + QK+TDE +K ID I Sbjct: 34 ANASLLNRINVEYYGAPTPLNQMAQISVPEARVLLVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGKVAVRNIRRDMMDALKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKI 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_GLOVI (Ribosome-recycling factor OS=Gloeobacter violaceus GN=frr PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39 Identity = 77/141 (54.61%), Postives = 109/141 (77.30%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +LD+I VEYYG P LK++A I TPD+S++LIQPYD SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+ AEEG+VAVRNIRR A+ K +K+ K+SED + L ++QKLTD+ +++I+ +++ Sbjct: 33 LLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDPSSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIRRHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFE 173
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SYMTH (Ribosome-recycling factor OS=Symbiobacterium thermophilum GN=frr PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.885e-39 Identity = 75/143 (52.45%), Postives = 111/143 (77.62%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 + P +LDK+ VE YGS V + ++A I PD +L+I+P+D+S +K+IE+AI +SDLG+ P NDG+VIRL++P +T ERR+EL KVVAK+ EE +VA+RNIRRDA + +KL+K+K +SED K ++QKLTD+Y+K++D + Sbjct: 32 ATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTLVIKPWDRSLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQRVAIRNIRRDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQL 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ENTFA (Ribosome-recycling factor OS=Enterococcus faecalis GN=frr PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.885e-39 Identity = 76/143 (53.15%), Postives = 106/143 (74.13%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +N +LD+I+VEYYG+P + +A IN P++ L+I P+DK+S+ IEKAI SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE KVAVRN+RRDA+ +K QK ++ED ++ D+QKLTD+ +K ID+I Sbjct: 32 ANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAI 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PELTS (Ribosome-recycling factor OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 6.380e-39 Identity = 75/143 (52.45%), Postives = 107/143 (74.83%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 + P +LDK+ V YYG+P + +A I+ P++ L++QP+DK+ L IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+AEEG+VA+RNIRRD + + QK+ K+SED +K ++QKLTD Y+K+IDS+ Sbjct: 32 ATPALLDKVMVNYYGTPTPVNQLANISVPEARLLVVQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRVAIRNIRRDTNEQLKSQQKDGKMSEDELKRSQDEVQKLTDRYIKEIDSL 174 The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bpback to top |