CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BURM7 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10247) GN=frr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 62/139 (44.60%), Postives = 101/139 (72.66%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVAVRN+RRDA +  +KL K+K++SED+ +  S D+QKLTD+++ +ID +
Sbjct:   37 LLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_WOLSU (Ribosome-recycling factor OS=Wolinella succinogenes GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 62/141 (43.97%), Postives = 100/141 (70.92%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +++ I V+YYG+P  L  +  +   D+++L+I P++K+ LK IEKAI  +++G+ PNNDG+VI+L  P +TSE+RKE++K      E+ KVAVRNIR+++    +KL+K+K ++ED  K    ++QK TD+Y+KKID + K
Sbjct:   37 IVEPIRVDYYGTPTPLSQVGSVIASDATTLVISPWEKNLLKGIEKAIQEANIGVNPNNDGDVIKLFFPPMTSEQRKEIAKDAKALGEKAKVAVRNIRKESNDKIKKLEKDKLITEDQSKKAHDEVQKYTDDYVKKIDDMVK 177          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_THICR (Ribosome-recycling factor OS=Thiomicrospira crunogena (strain XCL-2) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 58/143 (40.56%), Postives = 101/143 (70.63%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +LD ++V+YYGS V +  +A +N  D+ +L +QP+++S +  +EKAI++SD+G+ P   G V+R+ +P LT ERRKE  K+   +AE+ KVA+RNIRRDA   ++ L K+K++++D ++     +QK TDE++ ++D +
Sbjct:   32 AHPSILDAVKVDYYGSEVPVSQVANVNVEDARTLTVQPWEQSMVSVVEKAIMTSDIGVNPVTTGNVMRIPMPPLTEERRKEFIKLAKSEAEQTKVAIRNIRRDANADFKNLNKDKEITDDELRQAEEQIQKATDEHVSQVDQM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACRJ (Ribosome-recycling factor OS=Lactobacillus reuteri (strain JCM 1112) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +L+ ++VEYYG+P  L  +A I  P++  LLI PYD+S L+ IEKAI +S+LG+TP NDG  IRL +PQLT +RRKEL K V  + E+ KVAVRN+RR+A+   +K  K    ++D   DL   +Q  TD  +K ++ I
Sbjct:   34 ANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDI 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACRD (Ribosome-recycling factor OS=Lactobacillus reuteri (strain DSM 20016) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +L+ ++VEYYG+P  L  +A I  P++  LLI PYD+S L+ IEKAI +S+LG+TP NDG  IRL +PQLT +RRKEL K V  + E+ KVAVRN+RR+A+   +K  K    ++D   DL   +Q  TD  +K ++ I
Sbjct:   34 ANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDI 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELAH (Ribosome-recycling factor OS=Helicobacter acinonychis (strain Sheeba) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 64/141 (45.39%), Postives = 99/141 (70.21%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE+AI  +++G+ PNNDGE I+L  P +T+E+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:   36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKVKKLEKDKEISEDESKKAQEQVQKITDEAIKKIDESVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HAEIN (Ribosome-recycling factor OS=Haemophilus influenzae GN=frr PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            + P +LD I+VEYYG+   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GKVAVRN+RRDA    + L K+K++SE+       ++QK+TD Y+KK+D +
Sbjct:   32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HAEIG (Ribosome-recycling factor OS=Haemophilus influenzae (strain PittGG) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            + P +LD I+VEYYG+   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GKVAVRN+RRDA    + L K+K++SE+       ++QK+TD Y+KK+D +
Sbjct:   32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_GEOLS (Ribosome-recycling factor OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 62/139 (44.60%), Postives = 99/139 (71.22%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD+++V+YYG+P SL  +A +  P+  ++ I P++   +  IEKAI++++LG+TP NDG++IRL LP LT ERRKE+ K + K  E+ KVAVRNIRR A+   +K++K+K ++ED +K    ++Q +TD  + K+D I
Sbjct:   36 LLDEVKVDYYGNPSSLSQVATLAVPEPRTITITPWESKMIGPIEKAILNANLGLTPGNDGKLIRLNLPPLTEERRKEIVKGMKKMDEDHKVAVRNIRRKAIDDLKKMEKDKSITEDELKKAEKEVQTVTDSIIAKLDEI 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CORGB (Ribosome-recycling factor OS=Corynebacterium glutamicum (strain R) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31
Identity = 61/143 (42.66%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP M + +  EYYG P  +  ++ I+ P+   LLI+PY+ SS++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERRK++ K+   + E+GK+A+RNIRR  +   +KLQK+    ED V+    +L K+T  ++ ++D +
Sbjct:   32 ANPAMFNGVMAEYYGVPTPITQMSSISVPEPRMLLIKPYEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIRNIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEV 174          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BURM72.198e-3144.60Ribosome-recycling factor OS=Burkholderia mallei (... [more]
RRF_WOLSU2.871e-3143.97Ribosome-recycling factor OS=Wolinella succinogene... [more]
RRF_THICR2.871e-3140.56Ribosome-recycling factor OS=Thiomicrospira crunog... [more]
RRF_LACRJ2.871e-3146.85Ribosome-recycling factor OS=Lactobacillus reuteri... [more]
RRF_LACRD2.871e-3146.85Ribosome-recycling factor OS=Lactobacillus reuteri... [more]
RRF_HELAH2.871e-3145.39Ribosome-recycling factor OS=Helicobacter acinonyc... [more]
RRF_HAEIN2.871e-3143.36Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_HAEIG2.871e-3143.36Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_GEOLS2.871e-3144.60Ribosome-recycling factor OS=Geobacter lovleyi (st... [more]
RRF_CORGB2.871e-3142.66Ribosome-recycling factor OS=Corynebacterium gluta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
back to top