CF832536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BURM7 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10247) GN=frr PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 62/139 (44.60%), Postives = 101/139 (72.66%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVAVRN+RRDA + +KL K+K++SED+ + S D+QKLTD+++ +ID + Sbjct: 37 LLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_WOLSU (Ribosome-recycling factor OS=Wolinella succinogenes GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 62/141 (43.97%), Postives = 100/141 (70.92%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +++ I V+YYG+P L + + D+++L+I P++K+ LK IEKAI +++G+ PNNDG+VI+L P +TSE+RKE++K E+ KVAVRNIR+++ +KL+K+K ++ED K ++QK TD+Y+KKID + K Sbjct: 37 IVEPIRVDYYGTPTPLSQVGSVIASDATTLVISPWEKNLLKGIEKAIQEANIGVNPNNDGDVIKLFFPPMTSEQRKEIAKDAKALGEKAKVAVRNIRKESNDKIKKLEKDKLITEDQSKKAHDEVQKYTDDYVKKIDDMVK 177
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_THICR (Ribosome-recycling factor OS=Thiomicrospira crunogena (strain XCL-2) GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 58/143 (40.56%), Postives = 101/143 (70.63%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 ++P +LD ++V+YYGS V + +A +N D+ +L +QP+++S + +EKAI++SD+G+ P G V+R+ +P LT ERRKE K+ +AE+ KVA+RNIRRDA ++ L K+K++++D ++ +QK TDE++ ++D + Sbjct: 32 AHPSILDAVKVDYYGSEVPVSQVANVNVEDARTLTVQPWEQSMVSVVEKAIMTSDIGVNPVTTGNVMRIPMPPLTEERRKEFIKLAKSEAEQTKVAIRNIRRDANADFKNLNKDKEITDDELRQAEEQIQKATDEHVSQVDQM 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACRJ (Ribosome-recycling factor OS=Lactobacillus reuteri (strain JCM 1112) GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +N +L+ ++VEYYG+P L +A I P++ LLI PYD+S L+ IEKAI +S+LG+TP NDG IRL +PQLT +RRKEL K V + E+ KVAVRN+RR+A+ +K K ++D DL +Q TD +K ++ I Sbjct: 34 ANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDI 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACRD (Ribosome-recycling factor OS=Lactobacillus reuteri (strain DSM 20016) GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +N +L+ ++VEYYG+P L +A I P++ LLI PYD+S L+ IEKAI +S+LG+TP NDG IRL +PQLT +RRKEL K V + E+ KVAVRN+RR+A+ +K K ++D DL +Q TD +K ++ I Sbjct: 34 ANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDI 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELAH (Ribosome-recycling factor OS=Helicobacter acinonychis (strain Sheeba) GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 64/141 (45.39%), Postives = 99/141 (70.21%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE+AI +++G+ PNNDGE I+L P +T+E+RK ++K E+ KVAVRNIR+DA +KL+K+K++SED K +QK+TDE +KKID K Sbjct: 36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERAIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKVKKLEKDKEISEDESKKAQEQVQKITDEAIKKIDESVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HAEIN (Ribosome-recycling factor OS=Haemophilus influenzae GN=frr PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 + P +LD I+VEYYG+ L+ +A + D+ +L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E+GKVAVRN+RRDA + L K+K++SE+ ++QK+TD Y+KK+D + Sbjct: 32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HAEIG (Ribosome-recycling factor OS=Haemophilus influenzae (strain PittGG) GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 + P +LD I+VEYYG+ L+ +A + D+ +L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E+GKVAVRN+RRDA + L K+K++SE+ ++QK+TD Y+KK+D + Sbjct: 32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_GEOLS (Ribosome-recycling factor OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 62/139 (44.60%), Postives = 99/139 (71.22%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD+++V+YYG+P SL +A + P+ ++ I P++ + IEKAI++++LG+TP NDG++IRL LP LT ERRKE+ K + K E+ KVAVRNIRR A+ +K++K+K ++ED +K ++Q +TD + K+D I Sbjct: 36 LLDEVKVDYYGNPSSLSQVATLAVPEPRTITITPWESKMIGPIEKAILNANLGLTPGNDGKLIRLNLPPLTEERRKEIVKGMKKMDEDHKVAVRNIRRKAIDDLKKMEKDKSITEDELKKAEKEVQTVTDSIIAKLDEI 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CORGB (Ribosome-recycling factor OS=Corynebacterium glutamicum (strain R) GN=frr PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.871e-31 Identity = 61/143 (42.66%), Postives = 97/143 (67.83%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +NP M + + EYYG P + ++ I+ P+ LLI+PY+ SS++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERRK++ K+ + E+GK+A+RNIRR + +KLQK+ ED V+ +L K+T ++ ++D + Sbjct: 32 ANPAMFNGVMAEYYGVPTPITQMSSISVPEPRMLLIKPYEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIRNIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEV 174 The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bpback to top |