CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RALME (Ribosome-recycling factor OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 62/139 (44.60%), Postives = 102/139 (73.38%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD ++V+YYGS V +  +A ++  D+ ++ +QP++K  ++++EKAI   DLG+ P   G+VIR+ +P LT ERR+EL+KVV  +AE  KVAVRN+RRDA + ++KL K+K +SED+ +    ++QKLTD+++ +ID +
Sbjct:   37 LLDHVQVDYYGSMVPISQVAAVSLADARTISVQPWEKKMVQAVEKAIRDGDLGLNPATMGDVIRVPMPPLTEERRRELTKVVKGEAEGAKVAVRNLRRDANEQFKKLVKDKAISEDDERRGQDEVQKLTDKFVAEIDKL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PSYCK (Ribosome-recycling factor OS=Psychrobacter cryohalolentis (strain K5) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 63/142 (44.37%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P ML  + V YYGSP  L  +A +N  DS +LL+QP+D++ +++I+KAI  +DLG+ P    +VIR+ +P LT E RK++ K+   +AE  +V++RNIRRD +   ++L KEK++SED+ +  S D+QK+TD+Y++ IDS
Sbjct:   32 AHPGMLTGVMVSYYGSPTPLNQVASVNVEDSRTLLVQPFDRTMVQAIDKAIREADLGLNPMT-ADVIRVPMPALTEETRKDMQKLARGEAENSRVSIRNIRRDMMNDIKELAKEKEISEDDERRASDDIQKITDKYIETIDS 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HAEI8 (Ribosome-recycling factor OS=Haemophilus influenzae (strain 86-028NP) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 61/143 (42.66%), Postives = 100/143 (69.93%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            + P +LD I+VEYYG+   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GKVA+RN+RRDA    + L K+K++SE+       ++QK+TD Y+KK+D +
Sbjct:   32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAIRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ERWT9 (Ribosome-recycling factor OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 66/142 (46.48%), Postives = 102/142 (71.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I V+YYGS   L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L KVV  +AE+G+V+VRN+RRDA    + L K+K++SED+ +    D+QK+TD ++KK+D+
Sbjct:   32 ASPSILDGIMVDYYGSATPLRQLASVTVEDSRTLKINVFDRSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNVRRDANDKLKALLKDKEISEDDDRRAQEDVQKMTDIFIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BIFLO (Ribosome-recycling factor OS=Bifidobacterium longum GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +L+ I V+YYG+P  +K++A I  P+  +L + P+D S   ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE  K+   +AE+GKVAVRNIRR   +  +K  K+ ++ ED    L  DL K+T     +ID++
Sbjct:   30 ANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGKVAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTL 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BIFLD (Ribosome-recycling factor OS=Bifidobacterium longum (strain DJO10A) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +L+ I V+YYG+P  +K++A I  P+  +L + P+D S   ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE  K+   +AE+GKVAVRNIRR   +  +K  K+ ++ ED    L  DL K+T     +ID++
Sbjct:   30 ANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGKVAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTL 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BAUCH (Ribosome-recycling factor OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 65/146 (44.52%), Postives = 103/146 (70.55%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +NP +LD I+V+YYGS + L+ +A I   D+ +L+I  +D+S +K +EKAI+ SDLG+TP+  G +IR+ LP LT ERR+ L K+V  +AE+GK++VRNIRRDA    + L K K +S D  +   S++QK+T+ +++++D I  +
Sbjct:   32 ANPNLLDNIKVDYYGSIMPLRQLANIIVEDTRTLVITLFDQSIIKRVEKAIIISDLGLTPDLSGTIIRVQLPSLTEERRRNLIKIVRNEAEQGKISVRNIRRDANDHIKILLKNKAISIDEERRSQSEIQKITEAWIRRLDQILSE 177          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ALHEH (Ribosome-recycling factor OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +LD I V YYG+ V L   A +   D+ +L + P++KS +  +EKAI SSDLG+TP   G VIR+ +P LT +RRKEL KVV  +AE+ +VA+RNIRRDA    ++L KEK++SED  +     +QKLTD+Y  ++D I ++
Sbjct:   36 LLDHISVTYYGTEVPLNQAASVKVEDARTLSVIPFEKSMVPEVEKAIQSSDLGLTPTTAGTVIRIPMPPLTEDRRKELVKVVRSEAEQARVAIRNIRRDANSDLKELLKEKEISEDEERGGEDAIQKLTDKYTGEVDRILQE 177          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_THERP (Ribosome-recycling factor OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=frr PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31
Identity = 63/144 (43.75%), Postives = 102/144 (70.83%), Query Frame = 3
Query:    9 PVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            P +L+ +EV YYG+P  L  +A I+ P++  L++Q +D++++ ++EKAI  S+LG+ P+ DG+ +R+ LP LT ERR++L K+V ++ EE KVA+RNIRRDAL   ++L K K++SED+ +     LQ LT+ Y+ + D + KQ
Sbjct:   34 PSLLEHLEVNYYGTPTPLNQLATISAPEARLLVVQVWDRNAVSAVEKAIRQSELGLNPSVDGQTLRIQLPPLTEERRRQLVKLVHEEVEETKVAIRNIRRDALADIKELLKNKEISEDDERRAEQRLQDLTNRYIAEADKLGKQ 177          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCTU (Ribosome-recycling factor OS=Mycobacterium tuberculosis GN=frr PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_RALME3.749e-3144.60Ribosome-recycling factor OS=Ralstonia metallidura... [more]
RRF_PSYCK3.749e-3144.37Ribosome-recycling factor OS=Psychrobacter cryohal... [more]
RRF_HAEI83.749e-3142.66Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_ERWT93.749e-3146.48Ribosome-recycling factor OS=Erwinia tasmaniensis ... [more]
RRF_BIFLO3.749e-3144.76Ribosome-recycling factor OS=Bifidobacterium longu... [more]
RRF_BIFLD3.749e-3144.76Ribosome-recycling factor OS=Bifidobacterium longu... [more]
RRF_BAUCH3.749e-3144.52Ribosome-recycling factor OS=Baumannia cicadellini... [more]
RRF_ALHEH3.749e-3147.18Ribosome-recycling factor OS=Alkalilimnicola ehrli... [more]
RRF_THERP4.896e-3143.75Ribosome-recycling factor OS=Thermomicrobium roseu... [more]
RRF_MYCTU4.896e-3143.45Ribosome-recycling factor OS=Mycobacterium tubercu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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