CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALPB (Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALNS (Ribosome-recycling factor OS=Salmonella newport (strain SL254) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALHS (Ribosome-recycling factor OS=Salmonella heidelberg (strain SL476) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALG2 (Ribosome-recycling factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALEP (Ribosome-recycling factor OS=Salmonella enteritidis PT4 (strain P125109) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALDC (Ribosome-recycling factor OS=Salmonella dublin (strain CT_02021853) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALCH (Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALAR (Ribosome-recycling factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALA4 (Ribosome-recycling factor OS=Salmonella agona (strain SL483) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOBA (Ribosome-recycling factor OS=Rhodopirellula baltica GN=frr PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLT 401
            +NP ++D I+VE YGS   LK +A I TP+   +LI+PYD +++K IEKAIV+ DLG+ P NDG VIRL +P L+ E RK++   + + AEE KV++RNIRRDA KA E  +K+K+++ED+       +Q+LT
Sbjct:   33 ANPGLVDSIKVEVYGSLTPLKQLASIGTPEPQQILIRPYDATTIKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAKVSIRNIRRDANKAAETAEKDKEMTEDDRDKTKDQVQELT 165          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SALPB6.395e-3145.77Ribosome-recycling factor OS=Salmonella paratyphi ... [more]
RRF_SALNS6.395e-3145.77Ribosome-recycling factor OS=Salmonella newport (s... [more]
RRF_SALHS6.395e-3145.77Ribosome-recycling factor OS=Salmonella heidelberg... [more]
RRF_SALG26.395e-3145.77Ribosome-recycling factor OS=Salmonella gallinarum... [more]
RRF_SALEP6.395e-3145.77Ribosome-recycling factor OS=Salmonella enteritidi... [more]
RRF_SALDC6.395e-3145.77Ribosome-recycling factor OS=Salmonella dublin (st... [more]
RRF_SALCH6.395e-3145.77Ribosome-recycling factor OS=Salmonella choleraesu... [more]
RRF_SALAR6.395e-3145.77Ribosome-recycling factor OS=Salmonella arizonae (... [more]
RRF_SALA46.395e-3145.77Ribosome-recycling factor OS=Salmonella agona (str... [more]
RRF_RHOBA6.395e-3148.87Ribosome-recycling factor OS=Rhodopirellula baltic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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