CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCBT (Ribosome-recycling factor OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRITIDYYGAATLITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCBP (Ribosome-recycling factor OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRITIDYYGAATLITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_JANMA (Ribosome-recycling factor OS=Janthinobacterium sp. (strain Marseille) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 63/139 (45.32%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD + VEYYG+P +L  +A +   D+ ++ +QP++K  +  +EKAI  +DLG+ P   GE+IR+  P LT ERRKE+ K+V  +AE+ K+AVRNIRRDA ++ +KL KEK  SED  +    ++QKLTD+++ +ID +
Sbjct:   37 ILDHVMVEYYGNPTNLSQVANVTLIDARTIGVQPFEKKMVAVVEKAIREADLGLNPATQGELIRVPTPPLTEERRKEMVKLVKSEAEDAKIAVRNIRRDANESLKKLVKEKACSEDEERRAQDEIQKLTDKFVIEIDKL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CORGL (Ribosome-recycling factor OS=Corynebacterium glutamicum GN=frr PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 61/143 (42.66%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP M + +  EYYG P  +  ++ I  P+   LLI+PY+ SS++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERRK++ K+   + E+GK+A+RNIRR  +   +KLQK+    ED V+    +L K+T  ++ ++D +
Sbjct:   32 ANPAMFNGVMAEYYGVPTPITQMSGITVPEPRMLLIKPYEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIRNIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BURM1 (Ribosome-recycling factor OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 61/139 (43.88%), Postives = 101/139 (72.66%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVA+RN+RRDA +A +KL K+K++SED+ +    D+QKLTD+++ +ID +
Sbjct:   37 LLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPPLTEERRRELTKVVKGEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BRASO (Ribosome-recycling factor OS=Bradyrhizobium sp. (strain ORS278) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 63/139 (45.32%), Postives = 100/139 (71.94%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            M++ ++VE YGS + L  +A ++ P+   L +Q +D+S +K++EKAIV S+LG++P  +G+VIRL +P+L  ERRKEL KV  K AE+ +VAVR++RRD L   +KL+K  ++SED+ + L+ D+QK TD  + +ID +
Sbjct:   38 MVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDRSMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEQARVAVRHVRRDGLDTLKKLEKNHEMSEDDQERLAGDVQKATDSVISEIDQL 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RUTMC (Ribosome-recycling factor OS=Ruthia magnifica subsp. Calyptogena magnifica GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 62/138 (44.93%), Postives = 98/138 (71.01%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            +L++I V+YYGS V L  +A I+  DS +  + P++K  +  IEKAI++S+LG+ P   G+++R+ LP LT ERR EL K+V  +AE+ KVA+RNIRRDA   +++L KEK++S D  +   + +QK+TD Y+K+I++
Sbjct:   36 LLEQIHVDYYGSMVPLSQVANISVEDSRTFKVSPWEKDMVAVIEKAIMTSNLGLNPQTMGQIMRIPLPPLTQERRGELVKIVKDEAEQAKVAIRNIRRDANSDFKELLKEKEISRDGARKAENSIQKITDTYIKEIEA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RICCK (Ribosome-recycling factor OS=Rickettsia canadensis (strain McKiel) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 65/142 (45.77%), Postives = 97/142 (68.31%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +LD + VE YGS + L  +A I+TPD+ ++ +Q +DKS +  +EK I  ++LG+TP  DG++IRL +P LT ERRKEL K+  K  E+ K+++RNIRRD  +  +KL+K   L++D    LS  +QKLT++Y  K+DS  KQ
Sbjct:   37 LLDSVIVEAYGSKIPLSQVASISTPDARTINVQVWDKSMVSLVEKGITIANLGLTPATDGQLIRLPIPILTEERRKELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKNNILTKDEHHSLSEQVQKLTNDYSNKVDSAIKQ 178          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOP5 (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain BisA53) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 63/139 (45.32%), Postives = 102/139 (73.38%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ML+ ++V+ YG+ + L  +A I+ P+   L +Q +DKS +K++EKAIV S+LG++P+ +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ + L+ D+QK+TD  ++++D +
Sbjct:   38 MLEPVQVDAYGTHMPLIQVATISVPEPRLLSVQVWDKSMIKAVEKAIVDSNLGLSPSTEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTLKKLEKNHEISEDDQERLAHDVQKVTDATIQEVDQL 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCA9 (Ribosome-recycling factor OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  ++ ++YYG+P  +  +A IN P++  ++I+PY+ + LK+IE AI +SDLG+ P+NDG +IR+ +PQLT ERR+EL K    + E+ KV +RNIRR A     +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFQRVVIDYYGTPTPITQVAGINVPEARMVVIKPYESNQLKAIEDAIRNSDLGLNPSNDGSIIRVAIPQLTEERRRELVKQAKGKGEDAKVTLRNIRRKANDELNRIKKDGEAGEDEVGRAEKDLDKTTAQYVSQIDELVK 176          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_MYCBT6.395e-3143.45Ribosome-recycling factor OS=Mycobacterium bovis (... [more]
RRF_MYCBP6.395e-3143.45Ribosome-recycling factor OS=Mycobacterium bovis (... [more]
RRF_JANMA6.395e-3145.32Ribosome-recycling factor OS=Janthinobacterium sp.... [more]
RRF_CORGL6.395e-3142.66Ribosome-recycling factor OS=Corynebacterium gluta... [more]
RRF_BURM16.395e-3143.88Ribosome-recycling factor OS=Burkholderia multivor... [more]
RRF_BRASO6.395e-3145.32Ribosome-recycling factor OS=Bradyrhizobium sp. (s... [more]
RRF_RUTMC8.352e-3144.93Ribosome-recycling factor OS=Ruthia magnifica subs... [more]
RRF_RICCK8.352e-3145.77Ribosome-recycling factor OS=Rickettsia canadensis... [more]
RRF_RHOP58.352e-3145.32Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_MYCA98.352e-3142.07Ribosome-recycling factor OS=Mycobacterium abscess... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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