CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ENT38 (Ribosome-recycling factor OS=Enterobacter sp. (strain 638) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 68/142 (47.89%), Postives = 100/142 (70.42%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I VEYYG+P  L+ +A +   D+ +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRKEL KVV  +AE  +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KK+D+
Sbjct:   32 ASPSLLDGIIVEYYGTPTPLRQLASVTVEDTRTLKINVFDRSLGPAVEKAIMASDLGLNPSSAGTDIRVPLPALTEERRKELIKVVRGEAEGARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKLDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BIFAA (Ribosome-recycling factor OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 64/143 (44.76%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +L+ I V+YYG+P  LK++A I  P+  +L + P+D S   ++EKA+  SDLG +P  DG VIRLT+P+LT ERRKE  K+   +AE+GKVAVRNIRR A ++ +K  K+  + ED    L  +L K+T +   ++D++
Sbjct:   31 ANPALLNGITVDYYGAPTPLKAVATIGVPEPRTLAVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKIAKGKAEDGKVAVRNIRRKAKESLDKAIKDGDMGEDEGDRLLKELDKVTKQTTDELDAL 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ACIAC (Ribosome-recycling factor OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 61/143 (42.66%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LD ++VEYYGS V L  +A ++  D+ ++ +QP++K     IEKAI  S+LG+ P + G++IR+ +P ++ ERRKE++K+   + E  KVAVRN+RRDA ++ +KL K+K  SED  K   +D+QK+TD+++ ++D++
Sbjct:   33 ANPALLDSVQVEYYGSMVPLSQVANVSLIDARTISVQPWEKGMGAKIEKAIRESELGLNPASMGDLIRVPMPPMSEERRKEMTKLARNEGEGAKVAVRNLRRDANESVKKLVKDKLASEDEQKRAEADIQKVTDKHIAEVDAL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PHOPR (Ribosome-recycling factor OS=Photobacterium profundum GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 67/143 (46.85%), Postives = 99/143 (69.23%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +LD I VEYYG+   LK +A +   DS +L I  +D+     IEKAI+ SDLG+ P + G VIR+ LP LT ERR++L K+V K+AE+G+VA+RNIRRDA    + L K+K++SED+ +    ++QKLTD  +K I+++
Sbjct:   32 AHPSLLDTIYVEYYGANTPLKQLANVVAEDSRTLAITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKEAEQGRVAIRNIRRDANADLKALLKDKEISEDDDRRAQDEIQKLTDVAVKNIEAV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_NITMU (Ribosome-recycling factor OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 63/139 (45.32%), Postives = 96/139 (69.06%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD + V+YYG+P ++  +A I+  D+ ++ + P++K  L +IEKAI +SDLG+ P   GE+IR+ +P LT ERR++L+KVV  + E  +VA+RNIRRDA    + L KEKK++ED  +    D+QKLTD Y+  ID +
Sbjct:   36 LLDHVTVDYYGNPTAINQVANISLADARTITVAPWEKKMLGAIEKAIRNSDLGLNPTTVGELIRVPMPPLTEERRRDLTKVVKHEGEAARVAMRNIRRDANAHLKDLLKEKKIAEDEERKGQEDIQKLTDRYIADIDKL 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LEPCP (Ribosome-recycling factor OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 65/143 (45.45%), Postives = 101/143 (70.63%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +LD++ V+YYGS + L  +A +   D+ ++ +QP++KS  + IEKAI  SDLG+ P++ G++IR+ +P LT ERRKEL+KVV    E+ KVAVRN+RRDA    +KL K+K +SED+ +    ++QKLTD  + +ID +
Sbjct:   33 AHPGILDQVHVDYYGSNLPLSQVANVTLIDARTISVQPWEKSMAQKIEKAIRESDLGLNPSSMGDLIRVPMPALTEERRKELTKVVRHAGEDSKVAVRNLRRDANDQAKKLLKDKLISEDDERRSVDEVQKLTDRVIAEIDRL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_EDWI9 (Ribosome-recycling factor OS=Edwardsiella ictaluri (strain 93-146) GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I+VEYYG+   L+ +A I   DS +L +  +D+S   +IEKAI++SDLG+ P + G VIR+ LP LT ERRK+L K+V  +AE G+V+VRN+RRDA    + L K+K++SED  +    ++QK+TD  +KKID+
Sbjct:   32 AHPNLLDGIQVEYYGTATPLRQLANIVAEDSRTLALTVFDRSMSGAIEKAILTSDLGLNPASAGTVIRVPLPPLTEERRKDLIKLVRSEAESGRVSVRNVRRDANDKVKALLKDKEISEDEDRKSQEEIQKITDLMIKKIDA 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DESPS (Ribosome-recycling factor OS=Desulfotalea psychrophila GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 65/139 (46.76%), Postives = 96/139 (69.06%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD I V  YGS + L  +A +  P+S  + +QP+D   +  IEKAI+ S LG+ P NDG+V+RL +PQLT +RRK+L K V K AEE +VA+RN+RRDA+   +  +K+K++SED++  L  D QK TD Y+K++D +
Sbjct:   35 ILDDITVVAYGSTMPLNQVATLTIPESRMIALQPWDPQMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKKIAEEFRVAIRNVRRDAIDTLKLQKKDKEISEDDLFKLQDDAQKETDIYIKQLDEV 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORT9 (Ribosome-recycling factor OS=Borrelia turicatae (strain 91E135) GN=frr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = 3
Query:    6 NPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434
            N  + DK+ V+YYG    L  +A ++ P++  ++IQP+DKS L  IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K   K AEE KVA RN+R++     +K +K+ +++ED+++ +  D+Q+ T+ Y+KKID I+
Sbjct:   32 NSSLFDKVLVDYYGEKTPLTRVANVSIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGAVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAARNVRQELNSKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIF 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_TOLAT (Ribosome-recycling factor OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 62/143 (43.36%), Postives = 99/143 (69.23%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            + P +LD I VEYYGS   L+ +A +   DS +L +  +D+S ++++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L K+V  +AE+ +V+VRN+RRD     + L K+K +SED+ +    ++QKLTD ++K +D +
Sbjct:   32 AQPALLDGIMVEYYGSATPLRQVANVVAEDSRTLAVSVFDRSMIQAVEKAIMTSDLGLNPSSAGTTIRVPLPALTEERRKDLIKLVRAEAEQARVSVRNVRRDCNADLKALLKDKDISEDDDRRAQEEIQKLTDSFVKLVDDL 174          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_ENT388.352e-3147.89Ribosome-recycling factor OS=Enterobacter sp. (str... [more]
RRF_BIFAA8.352e-3144.76Ribosome-recycling factor OS=Bifidobacterium adole... [more]
RRF_ACIAC8.352e-3142.66Ribosome-recycling factor OS=Acidovorax avenae sub... [more]
RRF_PHOPR1.091e-3046.85Ribosome-recycling factor OS=Photobacterium profun... [more]
RRF_NITMU1.091e-3045.32Ribosome-recycling factor OS=Nitrosospira multifor... [more]
RRF_LEPCP1.091e-3045.45Ribosome-recycling factor OS=Leptothrix cholodnii ... [more]
RRF_EDWI91.091e-3047.18Ribosome-recycling factor OS=Edwardsiella ictaluri... [more]
RRF_DESPS1.091e-3046.76Ribosome-recycling factor OS=Desulfotalea psychrop... [more]
RRF_BORT91.091e-3044.06Ribosome-recycling factor OS=Borrelia turicatae (s... [more]
RRF_TOLAT1.425e-3043.36Ribosome-recycling factor OS=Tolumonas auensis (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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