CF832536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORHD (Ribosome-recycling factor OS=Borrelia hermsii (strain DAH) GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 63/140 (45.00%), Postives = 99/140 (70.71%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434 + DK+ V+YYG L +A I+ P++ ++IQP+DKS L IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K K AEE KVA RN+R++ +K +K+ +++ED+++ + D+Q+ T+ Y+KKID I+ Sbjct: 35 LFDKVLVDYYGEKTPLTRVANISIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGSVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAARNVRQELNNKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIF 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACV8 (Ribosome-recycling factor OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 66/139 (47.48%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS + IEKAI+ SDLG+TP N+GE+IRL +P LT ERRK+L+K + E KV++RN RRDA+ +K KE + ED K+ + LQK+ D+Y+ KI+ + Sbjct: 38 LLDGIRVDSYGSMVPISNVAAVTTPDARSIAIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAKVSIRNARRDAIDTLKKAVKE-GMPEDEQKNAEAKLQKVHDKYIAKIEEL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACTN (Ribosome-recycling factor OS=Bacteroides thetaiotaomicron GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30 Identity = 65/139 (46.76%), Postives = 100/139 (71.94%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD I V+ YGS V + ++A ++TPD+ S+ I+P+DKS ++IEKAI+ SDLG+ P N+GEVIR+ +P LT ERR++L+K + E KV+VRN RRD + A +K K+ L+ED K+ + LQK+ D+Y+K+I+ + Sbjct: 38 LLDGIRVDSYGSMVPISNVAALSTPDARSITIKPWDKSMFRAIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRRQLAKQCKAEGETAKVSVRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKIHDKYIKQIEDM 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALRD (Ribosome-recycling factor OS=Salinibacter ruber (strain DSM 13855) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 57/146 (39.04%), Postives = 100/146 (68.49%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440 ++P ML+ + VEYYGS L+ +A ++ P +++QP+D++++++IE+ I+ +DLG+ PNNDGE IR+ +P L+ ERRKEL + ++AEE K+++RNIRRDA + + + + SED + DLQ +TD + + ++ + +Q Sbjct: 36 ASPAMLENVTVEYYGSQTPLEQVASVSAPQPDLIVVQPFDRNAIENIERGIMKADLGLNPNNDGEKIRIPIPPLSEERRKELVETSRERAEETKISIRNIRRDAKNEIQNVVEAENFSEDVLYGAEEDLQDITDAHTETVEGLLEQ 181
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_POLSJ (Ribosome-recycling factor OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 62/143 (43.36%), Postives = 97/143 (67.83%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +NP +LD + V+YYGS V + +A ++ D+ ++ + P++K IEKAI SDLG+ P G++IR+ +P +T ERRKEL+KVV + E KVAVRN+RRDA + +KL KEK +SED+ + ++QK TD ++ ++D + Sbjct: 33 ANPGLLDTVHVDYYGSMVPISQVANVSLLDARTISVSPWEKGMGAKIEKAIRDSDLGLNPAAQGDLIRVPMPAMTEERRKELTKVVRAEGEHAKVAVRNLRRDANEGVKKLLKEKLVSEDDERRAQDEIQKFTDRFIAEVDKL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCVP (Ribosome-recycling factor OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 62/145 (42.76%), Postives = 97/145 (66.90%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M ++I V+YYG+ + ++ IN P++ ++I+PY+ S L+ IE AI +SDLG+ P NDG VIR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ ED+V DL K T +Y +ID + K Sbjct: 32 ANPGMFNRIHVDYYGAVTPITQLSSINVPEARMVVIKPYEASQLRPIEDAIRNSDLGVNPTNDGNVIRVSIPQLTEERRRDLVKQAKGKGEDAKVSVRNIRRKAMEELTRIKKDGDAGEDDVARAEKDLDKTTQQYTHQIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELPJ (Ribosome-recycling factor OS=Helicobacter pylori J99 GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +T+E+RK ++K E+ KVAVRN R+DA +KL+K+K++SED K +QK+TDE +KKID K Sbjct: 36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELPG (Ribosome-recycling factor OS=Helicobacter pylori (strain G27) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +T+E+RK ++K E+ KVAVRN R+DA +KL+K+K++SED K +QK+TDE +KKID K Sbjct: 36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BURTA (Ribosome-recycling factor OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 61/139 (43.88%), Postives = 100/139 (71.94%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVAVRN+RRDA + +KL K+K++SED+ + D+QKLTD+++ +ID + Sbjct: 37 LLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKGEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BRASB (Ribosome-recycling factor OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 62/139 (44.60%), Postives = 100/139 (71.94%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 M++ ++VE YGS + L +A ++ P+ L +Q +D++ +K++EKAIV S+LG++P +G+VIRL +P+L ERRKEL KV K AE +VAVR++RRD L +KL+K ++SED+ + L++D+QK TD + +ID + Sbjct: 38 MVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDRTMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEAARVAVRHVRRDGLDTVKKLEKNHEISEDDQERLATDIQKATDSVISEIDQL 176 The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bpback to top |