CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORHD (Ribosome-recycling factor OS=Borrelia hermsii (strain DAH) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 63/140 (45.00%), Postives = 99/140 (70.71%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434
            + DK+ V+YYG    L  +A I+ P++  ++IQP+DKS L  IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K   K AEE KVA RN+R++     +K +K+ +++ED+++ +  D+Q+ T+ Y+KKID I+
Sbjct:   35 LFDKVLVDYYGEKTPLTRVANISIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGSVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAARNVRQELNNKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIF 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACV8 (Ribosome-recycling factor OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 66/139 (47.48%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS  + IEKAI+ SDLG+TP N+GE+IRL +P LT ERRK+L+K    + E  KV++RN RRDA+   +K  KE  + ED  K+  + LQK+ D+Y+ KI+ +
Sbjct:   38 LLDGIRVDSYGSMVPISNVAAVTTPDARSIAIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCKGEGETAKVSIRNARRDAIDTLKKAVKE-GMPEDEQKNAEAKLQKVHDKYIAKIEEL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACTN (Ribosome-recycling factor OS=Bacteroides thetaiotaomicron GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 65/139 (46.76%), Postives = 100/139 (71.94%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD I V+ YGS V + ++A ++TPD+ S+ I+P+DKS  ++IEKAI+ SDLG+ P N+GEVIR+ +P LT ERR++L+K    + E  KV+VRN RRD + A +K  K+  L+ED  K+  + LQK+ D+Y+K+I+ +
Sbjct:   38 LLDGIRVDSYGSMVPISNVAALSTPDARSITIKPWDKSMFRAIEKAIIDSDLGIMPENNGEVIRIGIPPLTEERRRQLAKQCKAEGETAKVSVRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKIHDKYIKQIEDM 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SALRD (Ribosome-recycling factor OS=Salinibacter ruber (strain DSM 13855) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 57/146 (39.04%), Postives = 100/146 (68.49%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            ++P ML+ + VEYYGS   L+ +A ++ P    +++QP+D++++++IE+ I+ +DLG+ PNNDGE IR+ +P L+ ERRKEL +   ++AEE K+++RNIRRDA    + + + +  SED +     DLQ +TD + + ++ + +Q
Sbjct:   36 ASPAMLENVTVEYYGSQTPLEQVASVSAPQPDLIVVQPFDRNAIENIERGIMKADLGLNPNNDGEKIRIPIPPLSEERRKELVETSRERAEETKISIRNIRRDAKNEIQNVVEAENFSEDVLYGAEEDLQDITDAHTETVEGLLEQ 181          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_POLSJ (Ribosome-recycling factor OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/143 (43.36%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LD + V+YYGS V +  +A ++  D+ ++ + P++K     IEKAI  SDLG+ P   G++IR+ +P +T ERRKEL+KVV  + E  KVAVRN+RRDA +  +KL KEK +SED+ +    ++QK TD ++ ++D +
Sbjct:   33 ANPGLLDTVHVDYYGSMVPISQVANVSLLDARTISVSPWEKGMGAKIEKAIRDSDLGLNPAAQGDLIRVPMPAMTEERRKELTKVVRAEGEHAKVAVRNLRRDANEGVKKLLKEKLVSEDDERRAQDEIQKFTDRFIAEVDKL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCVP (Ribosome-recycling factor OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/145 (42.76%), Postives = 97/145 (66.90%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M ++I V+YYG+   +  ++ IN P++  ++I+PY+ S L+ IE AI +SDLG+ P NDG VIR+++PQLT ERR++L K    + E+ KV+VRNIRR A++   +++K+    ED+V     DL K T +Y  +ID + K
Sbjct:   32 ANPGMFNRIHVDYYGAVTPITQLSSINVPEARMVVIKPYEASQLRPIEDAIRNSDLGVNPTNDGNVIRVSIPQLTEERRRDLVKQAKGKGEDAKVSVRNIRRKAMEELTRIKKDGDAGEDDVARAEKDLDKTTQQYTHQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELPJ (Ribosome-recycling factor OS=Helicobacter pylori J99 GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE++I  +++G+ PNNDGE I+L  P +T+E+RK ++K      E+ KVAVRN R+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:   36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELPG (Ribosome-recycling factor OS=Helicobacter pylori (strain G27) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE++I  +++G+ PNNDGE I+L  P +T+E+RK ++K      E+ KVAVRN R+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:   36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BURTA (Ribosome-recycling factor OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 61/139 (43.88%), Postives = 100/139 (71.94%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVAVRN+RRDA +  +KL K+K++SED+ +    D+QKLTD+++ +ID +
Sbjct:   37 LLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKGEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BRASB (Ribosome-recycling factor OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 62/139 (44.60%), Postives = 100/139 (71.94%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            M++ ++VE YGS + L  +A ++ P+   L +Q +D++ +K++EKAIV S+LG++P  +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ + L++D+QK TD  + +ID +
Sbjct:   38 MVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDRTMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEAARVAVRHVRRDGLDTVKKLEKNHEISEDDQERLATDIQKATDSVISEIDQL 176          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BORHD1.425e-3045.00Ribosome-recycling factor OS=Borrelia hermsii (str... [more]
RRF_BACV81.425e-3047.48Ribosome-recycling factor OS=Bacteroides vulgatus ... [more]
RRF_BACTN1.425e-3046.76Ribosome-recycling factor OS=Bacteroides thetaiota... [more]
RRF_SALRD1.861e-3039.04Ribosome-recycling factor OS=Salinibacter ruber (s... [more]
RRF_POLSJ1.861e-3043.36Ribosome-recycling factor OS=Polaromonas sp. (stra... [more]
RRF_MYCVP1.861e-3042.76Ribosome-recycling factor OS=Mycobacterium vanbaal... [more]
RRF_HELPJ1.861e-3043.97Ribosome-recycling factor OS=Helicobacter pylori J... [more]
RRF_HELPG1.861e-3043.97Ribosome-recycling factor OS=Helicobacter pylori (... [more]
RRF_BURTA1.861e-3043.88Ribosome-recycling factor OS=Burkholderia thailand... [more]
RRF_BRASB1.861e-3044.60Ribosome-recycling factor OS=Bradyrhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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