CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORA1 (Ribosome-recycling factor OS=Bordetella avium (strain 197N) GN=frr PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30
Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +LD ++VEYYGSPV +  +A +N  D+ ++ +QPY+K     IE+AI  SDLG+ P + G+ IR+ +P LT ERR++L+KVV  + E+ KVAVRN+RR+A +A +KL K+K +SED+ +    ++QKLTD  +  ID +  Q
Sbjct:   37 ILDHVQVEYYGSPVPVGQVANLNLVDARTISVQPYEKHMAGPIERAIRDSDLGLNPVSLGDTIRVPMPALTEERRRDLTKVVRSEGEDAKVAVRNLRREANEALKKLVKDKIISEDDERRGQDEVQKLTDRAVADIDKMVTQ 178          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RALPJ (Ribosome-recycling factor OS=Ralstonia pickettii (strain 12J) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 61/139 (43.88%), Postives = 100/139 (71.94%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD ++V+YYGS V +  +A +   D+ ++ +QP++K  ++++EKAI  +DLG+ P   G++IR+  P LT ERRKEL+KVV  + E+ KVAVRN+RRDA +  +KL K+K +SED+ +    ++QKLTD+++ +ID +
Sbjct:   37 LLDHVQVDYYGSMVPISQVANVTLVDARTIGVQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKVAVRNLRRDANEQLKKLVKDKAISEDDERRGGDEVQKLTDKFVAEIDKL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HERAR (Ribosome-recycling factor OS=Herminiimonas arsenicoxydans GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 60/139 (43.17%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD + VEYYG+P +L  +A +   D+ ++ +QP++K  +  +EKAI  +DLG+ P   GE+IR+  P LT ERRKE+ K+V  +AE+ K+A+RNIRRDA +  +KL K+K  SED+ +    ++QKLTD+++ ++D +
Sbjct:   37 ILDHVMVEYYGNPTNLTQVANVTLIDARTIGVQPFEKKMVAVVEKAIRDADLGLNPATQGEMIRVPTPPLTEERRKEMVKLVKSEAEDAKIAIRNIRRDANETLKKLLKDKACSEDDERRAQDEIQKLTDKFVLEVDKL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELPS (Ribosome-recycling factor OS=Helicobacter pylori (strain Shi470) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE++I  +++G+ PNNDGE I+L  P +T+E+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +K ID   K
Sbjct:   36 ILDHIKVDYYGTPTTLNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DEIDV (Ribosome-recycling factor OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=frr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 63/144 (43.75%), Postives = 102/144 (70.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434
            +NP +L K+ V+YYGS + +  +A I TPD+ +L+I P+D+ +L  IEKAI  SDLG+ PNN G+ I ++LP LT ERRK+L K     AE+ ++AVRNIR+ AL   ++++K + + +D +K   +++QK+TDE++ ++DS +
Sbjct:   34 ANPGILKKVIVDYYGSTMPIDQVASITTPDARTLVITPWDRGALGPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNIRKHAL---DEVKKVEGVGDDEIKRGEAEVQKITDEFIARVDSTF 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SODGM (Ribosome-recycling factor OS=Sodalis glossinidius (strain morsitans) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 64/142 (45.07%), Postives = 100/142 (70.42%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            ++P +LD I+++YYG    L+ +A I   DS +L I  +D++   ++EKAI++SDLG+ P++ G VIR+ LP LT ERR++L KVV  +AE+G+V+VRN+RRDA    + L K+K + ED  +    ++QKLTD ++KK+DS
Sbjct:   32 ASPSLLDGIQIDYYGLLTPLRQLANIIAEDSRTLAITVFDRTLAPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRRDLIKVVRAEAEQGRVSVRNVRRDANDKVKALLKDKTIGEDEDRRSQDEIQKLTDAWIKKLDS 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_NOVAD (Ribosome-recycling factor OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 63/141 (44.68%), Postives = 97/141 (68.79%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD I VE YGS + L  +A ++ P+   L +Q +DKS++  +EKAI S+ LG+ P +DG  +RL +P LT ERRKEL+K+ +K AE  ++A+RN+RRD + A +  + +K++SED  K   +DLQKLTD+ +K+ D
Sbjct:   32 ANTALLDPIVVEVYGSHMPLAQVATVSAPEPRLLSVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASKYAENARIAIRNVRRDGMDALKADESKKEISEDERKRAETDLQKLTDDIIKQAD 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_GEOSM (Ribosome-recycling factor OS=Geobacter sp. (strain M21) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 61/139 (43.88%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD I+++ YG+   L  +A +  P++ ++ I P+D   +  IEKAI++S+LG+ P NDG++IRL LP LT ERRK++ K + + AEE KVA+RNIRRDA+   +KL+K+K +SED +K    D+Q  T+ ++ K+D +
Sbjct:   36 LLDDIKIDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLVLPPLTEERRKDIVKQLKRDAEEAKVALRNIRRDAIDQLKKLEKDKSISEDELKRAEKDVQDSTNSHVAKVDEV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DIAST (Ribosome-recycling factor OS=Diaphorobacter sp. (strain TPSY) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LD I VEYYGS V L  +A +   D+ ++ +QP++K+    IEKAI  SDLG+ P + G++IR+ +P ++ ERRKE++K+   + E  KVA+RN+RRDA +  +KL K+K  SED+ K   +D+QK TD+++ +ID++
Sbjct:   33 ANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDAL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ARTCA (Ribosome-recycling factor OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 61/146 (41.78%), Postives = 99/146 (67.81%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +NP + +++ V+YYGSP  L+ +A    PD+ ++LI P+DK++L+ IE+A+  S++G  P+NDG VIR+T+P+LT ERRKE  K+V  + E+ KV++RNIRR A +A ++L K+ +  ED       +L  LT  ++  ID + K+
Sbjct:   32 ANPGLYNRVLVDYYGSPTPLQQLASFAIPDARTILITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAKVSIRNIRRKAKEALDRLVKDGEAGEDEGTRAEKELDGLTKAHVDGIDELLKR 177          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BORA11.861e-3045.77Ribosome-recycling factor OS=Bordetella avium (str... [more]
RRF_RALPJ2.430e-3043.88Ribosome-recycling factor OS=Ralstonia pickettii (... [more]
RRF_HERAR2.430e-3043.17Ribosome-recycling factor OS=Herminiimonas arsenic... [more]
RRF_HELPS2.430e-3043.97Ribosome-recycling factor OS=Helicobacter pylori (... [more]
RRF_DEIDV2.430e-3043.75Ribosome-recycling factor OS=Deinococcus deserti (... [more]
RRF_SODGM3.174e-3045.07Ribosome-recycling factor OS=Sodalis glossinidius ... [more]
RRF_NOVAD3.174e-3044.68Ribosome-recycling factor OS=Novosphingobium aroma... [more]
RRF_GEOSM3.174e-3043.88Ribosome-recycling factor OS=Geobacter sp. (strain... [more]
RRF_DIAST3.174e-3044.06Ribosome-recycling factor OS=Diaphorobacter sp. (s... [more]
RRF_ARTCA3.174e-3041.78Ribosome-recycling factor OS=Arthrobacter chloroph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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