CF832536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORA1 (Ribosome-recycling factor OS=Bordetella avium (strain 197N) GN=frr PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.861e-30 Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440 +LD ++VEYYGSPV + +A +N D+ ++ +QPY+K IE+AI SDLG+ P + G+ IR+ +P LT ERR++L+KVV + E+ KVAVRN+RR+A +A +KL K+K +SED+ + ++QKLTD + ID + Q Sbjct: 37 ILDHVQVEYYGSPVPVGQVANLNLVDARTISVQPYEKHMAGPIERAIRDSDLGLNPVSLGDTIRVPMPALTEERRRDLTKVVRSEGEDAKVAVRNLRREANEALKKLVKDKIISEDDERRGQDEVQKLTDRAVADIDKMVTQ 178
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RALPJ (Ribosome-recycling factor OS=Ralstonia pickettii (strain 12J) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 61/139 (43.88%), Postives = 100/139 (71.94%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD ++V+YYGS V + +A + D+ ++ +QP++K ++++EKAI +DLG+ P G++IR+ P LT ERRKEL+KVV + E+ KVAVRN+RRDA + +KL K+K +SED+ + ++QKLTD+++ +ID + Sbjct: 37 LLDHVQVDYYGSMVPISQVANVTLVDARTIGVQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVVKGEGEDAKVAVRNLRRDANEQLKKLVKDKAISEDDERRGGDEVQKLTDKFVAEIDKL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HERAR (Ribosome-recycling factor OS=Herminiimonas arsenicoxydans GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 60/139 (43.17%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD + VEYYG+P +L +A + D+ ++ +QP++K + +EKAI +DLG+ P GE+IR+ P LT ERRKE+ K+V +AE+ K+A+RNIRRDA + +KL K+K SED+ + ++QKLTD+++ ++D + Sbjct: 37 ILDHVMVEYYGNPTNLTQVANVTLIDARTIGVQPFEKKMVAVVEKAIRDADLGLNPATQGEMIRVPTPPLTEERRKEMVKLVKSEAEDAKIAIRNIRRDANETLKKLLKDKACSEDDERRAQDEIQKLTDKFVLEVDKL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELPS (Ribosome-recycling factor OS=Helicobacter pylori (strain Shi470) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 62/141 (43.97%), Postives = 98/141 (69.50%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +T+E+RK ++K E+ KVAVRNIR+DA +KL+K+K++SED K +QK+TDE +K ID K Sbjct: 36 ILDHIKVDYYGTPTTLNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKIKKLEKDKEISEDESKKAQEQIQKITDEAIKTIDESVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DEIDV (Ribosome-recycling factor OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=frr PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30 Identity = 63/144 (43.75%), Postives = 102/144 (70.83%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434 +NP +L K+ V+YYGS + + +A I TPD+ +L+I P+D+ +L IEKAI SDLG+ PNN G+ I ++LP LT ERRK+L K AE+ ++AVRNIR+ AL ++++K + + +D +K +++QK+TDE++ ++DS + Sbjct: 34 ANPGILKKVIVDYYGSTMPIDQVASITTPDARTLVITPWDRGALGPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNIRKHAL---DEVKKVEGVGDDEIKRGEAEVQKITDEFIARVDSTF 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SODGM (Ribosome-recycling factor OS=Sodalis glossinidius (strain morsitans) GN=frr PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30 Identity = 64/142 (45.07%), Postives = 100/142 (70.42%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428 ++P +LD I+++YYG L+ +A I DS +L I +D++ ++EKAI++SDLG+ P++ G VIR+ LP LT ERR++L KVV +AE+G+V+VRN+RRDA + L K+K + ED + ++QKLTD ++KK+DS Sbjct: 32 ASPSLLDGIQIDYYGLLTPLRQLANIIAEDSRTLAITVFDRTLAPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRRDLIKVVRAEAEQGRVSVRNVRRDANDKVKALLKDKTIGEDEDRRSQDEIQKLTDAWIKKLDS 173
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_NOVAD (Ribosome-recycling factor OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=frr PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30 Identity = 63/141 (44.68%), Postives = 97/141 (68.79%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425 +N +LD I VE YGS + L +A ++ P+ L +Q +DKS++ +EKAI S+ LG+ P +DG +RL +P LT ERRKEL+K+ +K AE ++A+RN+RRD + A + + +K++SED K +DLQKLTD+ +K+ D Sbjct: 32 ANTALLDPIVVEVYGSHMPLAQVATVSAPEPRLLSVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASKYAENARIAIRNVRRDGMDALKADESKKEISEDERKRAETDLQKLTDDIIKQAD 172
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_GEOSM (Ribosome-recycling factor OS=Geobacter sp. (strain M21) GN=frr PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30 Identity = 61/139 (43.88%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD I+++ YG+ L +A + P++ ++ I P+D + IEKAI++S+LG+ P NDG++IRL LP LT ERRK++ K + + AEE KVA+RNIRRDA+ +KL+K+K +SED +K D+Q T+ ++ K+D + Sbjct: 36 LLDDIKIDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLVLPPLTEERRKDIVKQLKRDAEEAKVALRNIRRDAIDQLKKLEKDKSISEDELKRAEKDVQDSTNSHVAKVDEV 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DIAST (Ribosome-recycling factor OS=Diaphorobacter sp. (strain TPSY) GN=frr PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30 Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +NP +LD I VEYYGS V L +A + D+ ++ +QP++K+ IEKAI SDLG+ P + G++IR+ +P ++ ERRKE++K+ + E KVA+RN+RRDA + +KL K+K SED+ K +D+QK TD+++ +ID++ Sbjct: 33 ANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDAL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ARTCA (Ribosome-recycling factor OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=frr PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30 Identity = 61/146 (41.78%), Postives = 99/146 (67.81%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440 +NP + +++ V+YYGSP L+ +A PD+ ++LI P+DK++L+ IE+A+ S++G P+NDG VIR+T+P+LT ERRKE K+V + E+ KV++RNIRR A +A ++L K+ + ED +L LT ++ ID + K+ Sbjct: 32 ANPGLYNRVLVDYYGSPTPLQQLASFAIPDARTILITPFDKTALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAKVSIRNIRRKAKEALDRLVKDGEAGEDEGTRAEKELDGLTKAHVDGIDELLKR 177 The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bpback to top |