CF832536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ACISJ (Ribosome-recycling factor OS=Acidovorax sp. (strain JS42) GN=frr PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30 Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +NP +LD I VEYYGS V L +A + D+ ++ +QP++K+ IEKAI SDLG+ P + G++IR+ +P ++ ERRKE++K+ + E KVA+RN+RRDA + +KL K+K SED+ K +D+QK TD+++ +ID++ Sbjct: 33 ANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDAL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBVY (Ribosome-recycling factor OS=Vibrio vulnificus (strain YJ016) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 ++P +L I V+YYG+ L +A + D+ +L I +DK + +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V +AE G+VAVRNIRRDA + L KEK++SED + ++QKLTD +KKID + Sbjct: 32 AHPSLLSGISVDYYGAATPLTQVANVIAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANSDLKALLKEKEISEDEDRKAQDEIQKLTDAAVKKIDDV 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBHB (Ribosome-recycling factor OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 66/143 (46.15%), Postives = 95/143 (66.43%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 ++P +L I VEYYG+P L +A + D+ +L I +DK + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V +AE +VAVRNIRRDA + L K+K++SED + ++QKLTD +KKID + Sbjct: 32 AHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGSRVAVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEV 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCSS (Ribosome-recycling factor OS=Mycobacterium sp. (strain MCS) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M +I V+YYG+ + ++ IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T Y +ID + K Sbjct: 32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCSK (Ribosome-recycling factor OS=Mycobacterium sp. (strain KMS) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M +I V+YYG+ + ++ IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T Y +ID + K Sbjct: 32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCSJ (Ribosome-recycling factor OS=Mycobacterium sp. (strain JLS) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M +I V+YYG+ + ++ IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T Y +ID + K Sbjct: 32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ERYLH (Ribosome-recycling factor OS=Erythrobacter litoralis (strain HTCC2594) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 58/142 (40.85%), Postives = 98/142 (69.01%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428 +N +LD + VE YG+ + L +A +N P+ L +Q +DK+++ ++EK I ++LG+ P DG+ +RL +P LT ERRKEL+K+ + AE+ K+A+RN+RRD ++ + +K K +SED+ K + ++QKLTD+Y+ + DS Sbjct: 32 ANTSLLDPVVVEVYGAMMPLNQVATVNAPEPRMLAVQVWDKANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQYAEKAKIAIRNVRRDGMEDLKADEKAKDISEDDRKRMEDEVQKLTDKYVAEADS 173
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CORK4 (Ribosome-recycling factor OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 58/143 (40.56%), Postives = 96/143 (67.13%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +NP M + ++ EYYG + +A I+ P+ LLI+PY+ S + +IE AI +SDLG+ P NDG+V+R+T+PQLT ERRKE+ ++ + E+ ++A+RNIRR + +++QK+ + ED V+ +L K T EY+ ++D + Sbjct: 32 ANPSMFNGVQAEYYGVMTPITQMATISVPEPRMLLIKPYEPSIMNAIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVRLAKSKGEDARIAIRNIRRKGMDELKRIQKDGEAGEDEVQAAEKELDKTTHEYVSQVDKL 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CAMLR (Ribosome-recycling factor OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 62/141 (43.97%), Postives = 94/141 (66.67%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +LD + V+YYGS L +A + D+S++ I P++K LK+IE AI ++++G+ PNNDGE ++L P +T E+R+E +K E+ KVA+RNIR+DA A +KL+K+K +SED K ++QK TD Y KID + K Sbjct: 36 ILDHVHVDYYGSQTPLNQVATVLATDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENAKSAKAMGEKAKVAIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKQTDNYTTKIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BRAJA (Ribosome-recycling factor OS=Bradyrhizobium japonicum GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 63/139 (45.32%), Postives = 98/139 (70.50%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 MLD ++VE YGS + L +A ++ P+ + +Q +DKS +K++EKAIV S+LG++P +G+V+RL +P+L ERRKEL KV K AE KVA R++RRD L +KL+K ++SED+ K + ++QK+TD + +ID + Sbjct: 39 MLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVRRDGLDVLKKLEKNHEMSEDDQKRHADEVQKVTDGTIAEIDQL 177 The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bpback to top |