CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ACISJ (Ribosome-recycling factor OS=Acidovorax sp. (strain JS42) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 63/143 (44.06%), Postives = 100/143 (69.93%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LD I VEYYGS V L  +A +   D+ ++ +QP++K+    IEKAI  SDLG+ P + G++IR+ +P ++ ERRKE++K+   + E  KVA+RN+RRDA +  +KL K+K  SED+ K   +D+QK TD+++ +ID++
Sbjct:   33 ANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSEGEGAKVAIRNLRRDANEGVKKLVKDKLASEDDQKRAEADVQKTTDKHIAEIDAL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBVY (Ribosome-recycling factor OS=Vibrio vulnificus (strain YJ016) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +L  I V+YYG+   L  +A +   D+ +L I  +DK   + +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V  +AE G+VAVRNIRRDA    + L KEK++SED  +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLSGISVDYYGAATPLTQVANVIAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANSDLKALLKEKEISEDEDRKAQDEIQKLTDAAVKKIDDV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBHB (Ribosome-recycling factor OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 66/143 (46.15%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +L  I VEYYG+P  L  +A +   D+ +L I  +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE  +VAVRNIRRDA    + L K+K++SED  +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLSGISVEYYGAPTPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGSRVAVRNIRRDANSDLKGLLKDKEISEDEDRKAQDEIQKLTDVAVKKIDEV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCSS (Ribosome-recycling factor OS=Mycobacterium sp. (strain MCS) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I V+YYG+   +  ++ IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T  Y  +ID + K
Sbjct:   32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCSK (Ribosome-recycling factor OS=Mycobacterium sp. (strain KMS) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I V+YYG+   +  ++ IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T  Y  +ID + K
Sbjct:   32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCSJ (Ribosome-recycling factor OS=Mycobacterium sp. (strain JLS) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I V+YYG+   +  ++ IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T  Y  +ID + K
Sbjct:   32 ANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEANQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIRRKAMEELARIKKDGEAGEDEVSRAEKDLDKTTHTYTHQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ERYLH (Ribosome-recycling factor OS=Erythrobacter litoralis (strain HTCC2594) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 58/142 (40.85%), Postives = 98/142 (69.01%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            +N  +LD + VE YG+ + L  +A +N P+   L +Q +DK+++ ++EK I  ++LG+ P  DG+ +RL +P LT ERRKEL+K+  + AE+ K+A+RN+RRD ++  +  +K K +SED+ K +  ++QKLTD+Y+ + DS
Sbjct:   32 ANTSLLDPVVVEVYGAMMPLNQVATVNAPEPRMLAVQVWDKANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQYAEKAKIAIRNVRRDGMEDLKADEKAKDISEDDRKRMEDEVQKLTDKYVAEADS 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CORK4 (Ribosome-recycling factor OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 58/143 (40.56%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP M + ++ EYYG    +  +A I+ P+   LLI+PY+ S + +IE AI +SDLG+ P NDG+V+R+T+PQLT ERRKE+ ++   + E+ ++A+RNIRR  +   +++QK+ +  ED V+    +L K T EY+ ++D +
Sbjct:   32 ANPSMFNGVQAEYYGVMTPITQMATISVPEPRMLLIKPYEPSIMNAIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVRLAKSKGEDARIAIRNIRRKGMDELKRIQKDGEAGEDEVQAAEKELDKTTHEYVSQVDKL 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CAMLR (Ribosome-recycling factor OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 62/141 (43.97%), Postives = 94/141 (66.67%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LD + V+YYGS   L  +A +   D+S++ I P++K  LK+IE AI ++++G+ PNNDGE ++L  P +T E+R+E +K      E+ KVA+RNIR+DA  A +KL+K+K +SED  K    ++QK TD Y  KID + K
Sbjct:   36 ILDHVHVDYYGSQTPLNQVATVLATDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENAKSAKAMGEKAKVAIRNIRKDANDAVKKLEKDKAISEDEAKKAYDEVQKQTDNYTTKIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BRAJA (Ribosome-recycling factor OS=Bradyrhizobium japonicum GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 63/139 (45.32%), Postives = 98/139 (70.50%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            MLD ++VE YGS + L  +A ++ P+   + +Q +DKS +K++EKAIV S+LG++P  +G+V+RL +P+L  ERRKEL KV  K AE  KVA R++RRD L   +KL+K  ++SED+ K  + ++QK+TD  + +ID +
Sbjct:   39 MLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVRRDGLDVLKKLEKNHEMSEDDQKRHADEVQKVTDGTIAEIDQL 177          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_ACISJ3.174e-3044.06Ribosome-recycling factor OS=Acidovorax sp. (strai... [more]
RRF_VIBVY4.145e-3046.85Ribosome-recycling factor OS=Vibrio vulnificus (st... [more]
RRF_VIBHB4.145e-3046.15Ribosome-recycling factor OS=Vibrio harveyi (strai... [more]
RRF_MYCSS4.145e-3041.38Ribosome-recycling factor OS=Mycobacterium sp. (st... [more]
RRF_MYCSK4.145e-3041.38Ribosome-recycling factor OS=Mycobacterium sp. (st... [more]
RRF_MYCSJ4.145e-3041.38Ribosome-recycling factor OS=Mycobacterium sp. (st... [more]
RRF_ERYLH4.145e-3040.85Ribosome-recycling factor OS=Erythrobacter litoral... [more]
RRF_CORK44.145e-3040.56Ribosome-recycling factor OS=Corynebacterium kropp... [more]
RRF_CAMLR4.145e-3043.97Ribosome-recycling factor OS=Campylobacter lari (s... [more]
RRF_BRAJA4.145e-3045.32Ribosome-recycling factor OS=Bradyrhizobium japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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