CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORBZ (Ribosome-recycling factor OS=Borrelia burgdorferi (strain ZS7) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 62/139 (44.60%), Postives = 99/139 (71.22%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            + DKI ++Y+G    +  ++ I  P++  ++IQP+DK+ L  IE+AI++SDL M P++DG VIR+ +P LTSERR+++ K   K AEE K++ RNIR+D     +K +KE +++ED++K +  D+QK TD Y+KKID+I
Sbjct:   35 IFDKIFIQYHGQRTPITQVSSIRIPEARLVVIQPWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDAI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORBU (Ribosome-recycling factor OS=Borrelia burgdorferi GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 64/139 (46.04%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            + D+I ++Y+     +  ++ I  P++  ++IQP+DKS L  IE+AI++SDL M P+NDG VIR+ +P LTSERR+E+ K   K AEE K++ RNIR+D     +K +KE +++ED +K +  D+QK TD Y+KKIDSI
Sbjct:   35 IFDRICIQYHDRRTPITQVSSIRIPEARLVVIQPWDKSILNKIEQAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKISTRNIRQDLNNKVKKQEKESEITEDCLKRILDDIQKSTDMYIKKIDSI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORAP (Ribosome-recycling factor OS=Borrelia afzelii (strain PKo) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 62/139 (44.60%), Postives = 99/139 (71.22%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            + DKI ++Y+G    +  ++ I  P++  ++IQP+DK+ L  IE+AI++SDL M P++DG VIR+ +P LTSERR+++ K   K AEE K++ RNIR+D     +K +KE +++ED++K +  D+QK TD Y+KKID+I
Sbjct:   35 IFDKIFIQYHGQRTPITQVSSIRIPEARLVVIQPWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDAI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBPA (Ribosome-recycling factor OS=Vibrio parahaemolyticus GN=frr PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 66/143 (46.15%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +L  I VEYYG+   L  +A +   D+ +L I  +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G+VAVRNIRRDA    + L K+K++SED  +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBCM (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V  +AE G+VAVRNIRRDA    + L K+K++SED+ +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBCH (Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V  +AE G+VAVRNIRRDA    + L K+K++SED+ +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBC3 (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V  +AE G+VAVRNIRRDA    + L K+K++SED+ +    ++QKLTD  +KKID +
Sbjct:   32 AHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SACEN (Ribosome-recycling factor OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M   I V+YYGSP  L  +A I+ P++  ++I+PYD S L ++EKAI  SDLG+ P+NDG++IR+++PQ+T ERRKE+ K+   + EEG++ VR IRR   +  +++ K+ +  ED       +L+ LT  Y+ +ID + K
Sbjct:   32 ANPAMFSGIVVDYYGSPTPLNQLASISVPEARLVVIKPYDASQLGAMEKAIRDSDLGVNPSNDGQLIRVSIPQMTEERRKEMVKLAKHKGEEGRITVRGIRRKVKEEIDRIVKDGEAGEDEGTRGEKELENLTHRYVAQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYXXD (Ribosome-recycling factor OS=Myxococcus xanthus (strain DK 1622) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 62/142 (43.66%), Postives = 98/142 (69.01%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +L+ + V+YYG+P  L  +A +N P+   + I+P++KS LK IEKA+  ++LG+ P NDGE+IRL  P LT ERRK+++K V  + EE KV +RN+RRDA +  +   K+KK++ED+ K ++  +QK TD  + ++D I K+
Sbjct:   36 ILEGVRVDYYGTPTPLSGVASVNAPEPRLITIKPWEKSVLKDIEKALREANLGINPMNDGEMIRLPFPPLTEERRKDIAKQVKTKGEEFKVTIRNLRRDANEVLKTQLKDKKITEDDHKRITEVVQKQTDAGITQVDEIVKK 177          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_GEOBB (Ribosome-recycling factor OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 61/139 (43.88%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD I+V+ YG+   L  +A +  P++ ++ I P+D   +  IEKAI++S+LG+ P NDG++IRLTLP LT ERRK++ K + + AE+ KVA+RNIRRDA+   +KL+K+K +SED  K    ++Q  T+ ++ K+D +
Sbjct:   36 LLDDIKVDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEDAKVALRNIRRDAIDQLKKLEKDKSISEDEQKRAEKEVQDFTNSHVAKVDEV 174          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BORBZ4.145e-3044.60Ribosome-recycling factor OS=Borrelia burgdorferi ... [more]
RRF_BORBU4.145e-3046.04Ribosome-recycling factor OS=Borrelia burgdorferi ... [more]
RRF_BORAP4.145e-3044.60Ribosome-recycling factor OS=Borrelia afzelii (str... [more]
RRF_VIBPA5.414e-3046.15Ribosome-recycling factor OS=Vibrio parahaemolytic... [more]
RRF_VIBCM5.414e-3044.76Ribosome-recycling factor OS=Vibrio cholerae serot... [more]
RRF_VIBCH5.414e-3044.76Ribosome-recycling factor OS=Vibrio cholerae GN=fr... [more]
RRF_VIBC35.414e-3044.76Ribosome-recycling factor OS=Vibrio cholerae serot... [more]
RRF_SACEN5.414e-3042.07Ribosome-recycling factor OS=Saccharopolyspora ery... [more]
RRF_MYXXD5.414e-3043.66Ribosome-recycling factor OS=Myxococcus xanthus (s... [more]
RRF_GEOBB5.414e-3043.88Ribosome-recycling factor OS=Geobacter bemidjiensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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