CF832536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_FERNB (Ribosome-recycling factor OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 62/146 (42.47%), Postives = 104/146 (71.23%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440 + P +L++I+++YYG P + +AQ+ T + L+I+P++++ L IEKAI++SDLG+TP NDG V+R+ P T+E+R++ K + EEGKVAVRNIRRD LK + +K ++SED+ K L ++Q LTD+Y+ ++D ++++ Sbjct: 32 ATPAVLEEIKIDYYGVPTPVLQVAQVTT-EERQLVIKPWERNLLNVIEKAILASDLGLTPVNDGTVVRINFPTPTTEQRQKWVKKAKEIVEEGKVAVRNIRRDILKDIKDKKKAGEISEDDEKRLEKEIQNLTDKYVAELDKLFEK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACFR (Ribosome-recycling factor OS=Bacteroides fragilis GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 64/139 (46.04%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS + IEKAI+ SDLG+ P N+GE+IR+ +P LT ERRK+L+K + E KV++RN RRD + A +K K+ L+ED K+ + LQK+ D+Y+ KI+ + Sbjct: 38 LLDGIRVDSYGSMVPISNVAAVTTPDARSITIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAEGETAKVSIRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKVHDKYIAKIEEM 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACFN (Ribosome-recycling factor OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 64/139 (46.04%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS + IEKAI+ SDLG+ P N+GE+IR+ +P LT ERRK+L+K + E KV++RN RRD + A +K K+ L+ED K+ + LQK+ D+Y+ KI+ + Sbjct: 38 LLDGIRVDSYGSMVPISNVAAVTTPDARSITIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAEGETAKVSIRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKVHDKYIAKIEEM 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOFD (Ribosome-recycling factor OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30 Identity = 61/143 (42.66%), Postives = 98/143 (68.53%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +NP +LD + V+YYG+ + + +A ++ D+ ++ +QP++K IEKAI SDLG+ P++ G++IR+ +P ++ ERRKELSKVV + E K+A+RN+RRDA +A K K+K SED K +D+QK+TD ++ ID + Sbjct: 33 ANPALLDTVHVDYYGAMLPISQVANVSLLDARTISVQPWEKGMGAKIEKAIRDSDLGLNPSSMGDLIRVPMPAMSEERRKELSKVVRGEGEGAKIAIRNLRRDANEAIRKAVKDKLASEDEQKRCETDIQKVTDRHVIVIDQL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCPA (Ribosome-recycling factor OS=Mycobacterium paratuberculosis GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30 Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M +I ++YYG+ + +A IN P++ ++I+PY+ S + +IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCGI (Ribosome-recycling factor OS=Mycobacterium gilvum (strain PYR-GCK) GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30 Identity = 57/145 (39.31%), Postives = 97/145 (66.90%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M ++I ++YYG+ + ++ IN P++ ++I+PY+ + L+ IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K + E+ KV++RNIRR A++ +++K+ ED+V DL K T +Y ++D + K Sbjct: 32 ANPGMFNRIHIDYYGASTPITQLSSINVPEARMVVIKPYEANQLRPIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKSKGEDAKVSIRNIRRKAMEELARIKKDGDAGEDDVTRAEKDLDKSTHQYTSQVDDLVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCA1 (Ribosome-recycling factor OS=Mycobacterium avium (strain 104) GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30 Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M +I ++YYG+ + +A IN P++ ++I+PY+ S + +IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + E+ KV+VRNIRR A++ +++K+ + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORRA (Ribosome-recycling factor OS=Borrelia recurrentis (strain A1) GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30 Identity = 61/143 (42.66%), Postives = 99/143 (69.23%), Query Frame = 3 Query: 6 NPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434 N + DK+ V+YYG L +A I+ P++ ++IQP+D+S L IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K K AE+ K+A RNIR + +K +K+ +++ED+++ + D+Q+ T+ Y+KKID I+ Sbjct: 32 NSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIF 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORDL (Ribosome-recycling factor OS=Borrelia duttonii (strain Ly) GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30 Identity = 61/143 (42.66%), Postives = 99/143 (69.23%), Query Frame = 3 Query: 6 NPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434 N + DK+ V+YYG L +A I+ P++ ++IQP+D+S L IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K K AE+ K+A RNIR + +K +K+ +++ED+++ + D+Q+ T+ Y+KKID I+ Sbjct: 32 NSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIF 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBFM (Ribosome-recycling factor OS=Vibrio fischeri (strain MJ11) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 ++P +L I VEYYG+ L +A + DS +L I +DK +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V +AE G+VAVRNIRRDA + L KEK++SED+ + ++QKLTD +K ID + Sbjct: 32 AHPSLLSGISVEYYGAKTPLNQVANVVAEDSRTLAITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAENGRVAVRNIRRDANGDVKALLKEKEISEDDDRRAQDEIQKLTDAAVKSIDEV 174 The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bpback to top |