CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_FERNB (Ribosome-recycling factor OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 62/146 (42.47%), Postives = 104/146 (71.23%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            + P +L++I+++YYG P  +  +AQ+ T +   L+I+P++++ L  IEKAI++SDLG+TP NDG V+R+  P  T+E+R++  K   +  EEGKVAVRNIRRD LK  +  +K  ++SED+ K L  ++Q LTD+Y+ ++D ++++
Sbjct:   32 ATPAVLEEIKIDYYGVPTPVLQVAQVTT-EERQLVIKPWERNLLNVIEKAILASDLGLTPVNDGTVVRINFPTPTTEQRQKWVKKAKEIVEEGKVAVRNIRRDILKDIKDKKKAGEISEDDEKRLEKEIQNLTDKYVAELDKLFEK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACFR (Ribosome-recycling factor OS=Bacteroides fragilis GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 64/139 (46.04%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS  + IEKAI+ SDLG+ P N+GE+IR+ +P LT ERRK+L+K    + E  KV++RN RRD + A +K  K+  L+ED  K+  + LQK+ D+Y+ KI+ +
Sbjct:   38 LLDGIRVDSYGSMVPISNVAAVTTPDARSITIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAEGETAKVSIRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKVHDKYIAKIEEM 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACFN (Ribosome-recycling factor OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 64/139 (46.04%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD I V+ YGS V + ++A + TPD+ S+ I+P+DKS  + IEKAI+ SDLG+ P N+GE+IR+ +P LT ERRK+L+K    + E  KV++RN RRD + A +K  K+  L+ED  K+  + LQK+ D+Y+ KI+ +
Sbjct:   38 LLDGIRVDSYGSMVPISNVAAVTTPDARSITIKPWDKSMFRVIEKAIIDSDLGIMPENNGEIIRIGIPPLTEERRKQLAKQCKAEGETAKVSIRNARRDGIDALKKAVKD-GLAEDEQKNAEAKLQKVHDKYIAKIEEM 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOFD (Ribosome-recycling factor OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 61/143 (42.66%), Postives = 98/143 (68.53%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LD + V+YYG+ + +  +A ++  D+ ++ +QP++K     IEKAI  SDLG+ P++ G++IR+ +P ++ ERRKELSKVV  + E  K+A+RN+RRDA +A  K  K+K  SED  K   +D+QK+TD ++  ID +
Sbjct:   33 ANPALLDTVHVDYYGAMLPISQVANVSLLDARTISVQPWEKGMGAKIEKAIRDSDLGLNPSSMGDLIRVPMPAMSEERRKELSKVVRGEGEGAKIAIRNLRRDANEAIRKAVKDKLASEDEQKRCETDIQKVTDRHVIVIDQL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCPA (Ribosome-recycling factor OS=Mycobacterium paratuberculosis GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ S + +IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCGI (Ribosome-recycling factor OS=Mycobacterium gilvum (strain PYR-GCK) GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 57/145 (39.31%), Postives = 97/145 (66.90%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M ++I ++YYG+   +  ++ IN P++  ++I+PY+ + L+ IE AI +SDLG+ P NDG +IR+++PQLT ERR++L K    + E+ KV++RNIRR A++   +++K+    ED+V     DL K T +Y  ++D + K
Sbjct:   32 ANPGMFNRIHIDYYGASTPITQLSSINVPEARMVVIKPYEANQLRPIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKSKGEDAKVSIRNIRRKAMEELARIKKDGDAGEDDVTRAEKDLDKSTHQYTSQVDDLVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCA1 (Ribosome-recycling factor OS=Mycobacterium avium (strain 104) GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ S + +IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + E+ KV+VRNIRR A++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEASQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVGRAEKDLDKTTHQYITQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORRA (Ribosome-recycling factor OS=Borrelia recurrentis (strain A1) GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 61/143 (42.66%), Postives = 99/143 (69.23%), Query Frame = 3
Query:    6 NPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434
            N  + DK+ V+YYG    L  +A I+ P++  ++IQP+D+S L  IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K   K AE+ K+A RNIR +     +K +K+ +++ED+++ +  D+Q+ T+ Y+KKID I+
Sbjct:   32 NSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIF 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BORDL (Ribosome-recycling factor OS=Borrelia duttonii (strain Ly) GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 61/143 (42.66%), Postives = 99/143 (69.23%), Query Frame = 3
Query:    6 NPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 434
            N  + DK+ V+YYG    L  +A I+ P++  ++IQP+D+S L  IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K   K AE+ K+A RNIR +     +K +K+ +++ED+++ +  D+Q+ T+ Y+KKID I+
Sbjct:   32 NSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKKIAEDHKIATRNIRHELNNKAKKQEKDSQITEDDLRRILDDIQRDTNFYIKKIDGIF 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_VIBFM (Ribosome-recycling factor OS=Vibrio fischeri (strain MJ11) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++P +L  I VEYYG+   L  +A +   DS +L I  +DK     +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V  +AE G+VAVRNIRRDA    + L KEK++SED+ +    ++QKLTD  +K ID +
Sbjct:   32 AHPSLLSGISVEYYGAKTPLNQVANVVAEDSRTLAITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAENGRVAVRNIRRDANGDVKALLKEKEISEDDDRRAQDEIQKLTDAAVKSIDEV 174          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_FERNB5.414e-3042.47Ribosome-recycling factor OS=Fervidobacterium nodo... [more]
RRF_BACFR5.414e-3046.04Ribosome-recycling factor OS=Bacteroides fragilis ... [more]
RRF_BACFN5.414e-3046.04Ribosome-recycling factor OS=Bacteroides fragilis ... [more]
RRF_RHOFD7.071e-3042.66Ribosome-recycling factor OS=Rhodoferax ferrireduc... [more]
RRF_MYCPA7.071e-3042.07Ribosome-recycling factor OS=Mycobacterium paratub... [more]
RRF_MYCGI7.071e-3039.31Ribosome-recycling factor OS=Mycobacterium gilvum ... [more]
RRF_MYCA17.071e-3042.07Ribosome-recycling factor OS=Mycobacterium avium (... [more]
RRF_BORRA7.071e-3042.66Ribosome-recycling factor OS=Borrelia recurrentis ... [more]
RRF_BORDL7.071e-3042.66Ribosome-recycling factor OS=Borrelia duttonii (st... [more]
RRF_VIBFM9.234e-3047.55Ribosome-recycling factor OS=Vibrio fischeri (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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