CF832549
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.978e-42 Identity = 99/158 (62.66%), Postives = 116/158 (73.42%), Query Frame = -1 Query: 236 MQQNQQHVPMMQPQMLPRGRVFRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSLN 709 +Q +QQ PMMQ QM PRGR+FRYP GRG G G + P G+ + P+ IGALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA AG +QLASL+L+ Sbjct: 494 IQHSQQQNPMMQQQMHPRGRMFRYPQGRG-------GSGDVPPYDMGN-----------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA----AGGATEQLASLNLS 629
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.257e-24 Identity = 73/154 (47.40%), Postives = 88/154 (57.14%), Query Frame = -1 Query: 251 NQQHVPMMQPQMLPRGRVFRYPSGRGMPDVSMPGVG--GMLPIPYGDMAAMPLRDAPISQPVP--IGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLA 700 N Q QML + R+ G G M G++P+P A +P P I LAS LA ASP++ MLG++LYPLVEQ EP AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A + DQ A Sbjct: 511 NNMQQQFQQQQMLQQN-ASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFA 663
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23 Identity = 67/139 (48.20%), Postives = 90/139 (64.75%), Query Frame = -1 Query: 299 QQHVPMMQPQMLPRGRVFRY----PSGRGMPDVSMPG--VGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 697 QQH+ Q RY +GR D S+P + ++P+P D +++ + AP+ +PI L S+LA+ASP + MLGE LYPLVE+ EP AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR Sbjct: 510 QQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPI-DASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.590e-19 Identity = 70/183 (38.25%), Postives = 97/183 (53.01%), Query Frame = -1 Query: 230 NQQHVPM--MQPQMLPRGRVF-----RYPSGRGMPDVSMPGVGGMLPIPYGD-MAAMPL----------RDAPISQP---VPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPADQLASLSLNDN 700 N Q +PM MQ +P G + ++ GRG V PG+GG + YG +PL R + QP P+G L A AL+ A P+QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L LLE EAL+AKV EA+ E ++N + + A P + +N Sbjct: 550 NFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQV--PGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPAAEKPKEAAQEAPAEEN 730
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.077e-19 Identity = 64/130 (49.23%), Postives = 80/130 (61.54%), Query Frame = -1 Query: 260 RYPSG-RGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPAD 643 R P+G G P + V G P+P G AA P QP GAL A+ALA ASPE+Q+ MLGE +YP V +P+ A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q AG A+ Sbjct: 517 RPPTGVNGAPRPAGQPVPGQ-PMPRGP-AARPAGRPEADQP---GALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDSAGAEAE 641
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.296e-18 Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = -1 Query: 260 RGRVFRYPSGRGMPDVSMPGVGGML--PIPYG----DMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGN-PAD 658 RG+V P G+GM G GG P P G + AA P A + P GAL A AL A+P QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V + + G PAD Sbjct: 599 RGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQP---AAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.538e-17 Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = -1 Query: 257 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQ 505 AS+LA+A P++Q+ MLGE LYPL+ ++ P A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+ ++ + A Q Sbjct: 544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.386e-17 Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = -1 Query: 302 RVFRYPSGRGMPDVSMPGVGGMLPIPYGDM---AAMPLRDAPISQPVP-IGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 652 R+ P+ G + VG +P G + MP R + P P G L A +LA A+P +Q+ MLGE LYPL+ + +P+ A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL Sbjct: 520 RIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.260e-16 Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = -1 Query: 239 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSL 505 AS LA A P++Q+ MLGE +YP++ ++ P A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL Q QA A + A SL Sbjct: 544 ASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVL----QAHQAKENAQKSAQPSL 628
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16 Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = -1 Query: 248 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLAS 505 AS LA A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL Q QA A ++ S Sbjct: 545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL----QAHQAKEAAQKVVS 626 The following BLAST results are available for this feature:
BLAST of CF832549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832549 ID=CF832549; Name=CF832549; organism=Citrus sinensis; type=EST; length=790bpback to top |