CF832549
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16 Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1 Query: 299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505 AS LA+A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16 Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1 Query: 299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505 AS LA+A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 60/146 (41.10%), Postives = 79/146 (54.11%), Query Frame = -1 Query: 305 MMQPQMLPRGRVFRYPSGRG----MPDVSM----PGVG---GMLPIPYGDMA------AMPLRDAPISQP---VPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 682 M PQ + + + R GRG MP++ PG G G +P+ G M AP +P V G A AL+ A P QQ+ MLGE LYP ++ +P+ A K+TGMLLEM+ TE+L LLE EAL+AKV EA+ V Sbjct: 585 MGYPQGMAQVQFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNV 730
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1 Query: 299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505 AS LA+A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1 Query: 299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505 AS LA+A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1 Query: 299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505 AS LA+A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16 Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = -1 Query: 248 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLAS 505 AS LA A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL Q QA A ++ + Sbjct: 545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL----QAHQAKEAAQKVVN 626
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16 Identity = 59/147 (40.14%), Postives = 75/147 (51.02%), Query Frame = -1 Query: 263 RGRVFRYPSGRGMPDVSMPGVG---GMLPIP--------YGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPA 658 RG+V P G+GM PG G G P+ G AA P P G A L P QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L LLE EAL+AKV EA+ E ++N + + PA Sbjct: 592 RGQVPGMPMGQGMRG---PGYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAEPA 735
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16 Identity = 48/123 (39.02%), Postives = 74/123 (60.16%), Query Frame = -1 Query: 299 PDVSMPGV---GGMLPIPYGDMAAMPLRDAPI-----SQPVPIGA--------LASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 619 P++ +PG GG +R+ P+ +QP+P +AS LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+ Sbjct: 503 PNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGKNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = -1 Query: 248 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLAS 505 AS LA A P++Q+ MLGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ +++A +A+ Sbjct: 556 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAA 641 The following BLAST results are available for this feature:
BLAST of CF832549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832549 ID=CF832549; Name=CF832549; organism=Citrus sinensis; type=EST; length=790bpback to top |