CF832549

Overview
NameCF832549
Unique NameCF832549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2803 contig Csv1_Contig2803:2..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1
Query:  299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1
Query:  299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 60/146 (41.10%), Postives = 79/146 (54.11%), Query Frame = -1
Query:  305 MMQPQMLPRGRVFRYPSGRG----MPDVSM----PGVG---GMLPIPYGDMA------AMPLRDAPISQP---VPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 682
            M  PQ + + +  R   GRG    MP++      PG G   G +P+  G M             AP  +P   V  G  A AL+ A P QQ+ MLGE LYP ++  +P+ A K+TGMLLEM+ TE+L LLE  EAL+AKV EA+ V
Sbjct:  585 MGYPQGMAQVQFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNV 730          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1
Query:  299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1
Query:  299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 39/69 (56.52%), Postives = 57/69 (82.61%), Query Frame = -1
Query:  299 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 505
            AS LA+A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = -1
Query:  248 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLAS 505
            AS LA A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL    Q  QA   A ++ +
Sbjct:  545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL----QAHQAKEAAQKVVN 626          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16
Identity = 59/147 (40.14%), Postives = 75/147 (51.02%), Query Frame = -1
Query:  263 RGRVFRYPSGRGMPDVSMPGVG---GMLPIP--------YGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPA 658
            RG+V   P G+GM     PG G   G  P+          G  AA P        P   G  A  L    P QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L LLE  EAL+AKV EA+    E ++N  + +    PA
Sbjct:  592 RGQVPGMPMGQGMRG---PGYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAEPA 735          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16
Identity = 48/123 (39.02%), Postives = 74/123 (60.16%), Query Frame = -1
Query:  299 PDVSMPGV---GGMLPIPYGDMAAMPLRDAPI-----SQPVPIGA--------LASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 619
            P++ +PG    GG             +R+ P+     +QP+P           +AS LANA P++Q+ +LGE LYP++E +  + A K+TGMLLE++ +E+LH++E  EALKAKV EA+ VL+
Sbjct:  503 PNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGKNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = -1
Query:  248 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLAS 505
            AS LA A P++Q+ MLGE L+PL++ +  + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+    +++A      +A+
Sbjct:  556 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAA 641          
The following BLAST results are available for this feature:
BLAST of CF832549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PABP1_RAT1.645e-1656.52Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE1.645e-1656.52Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP_ASPOR2.149e-1641.10Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB2.149e-1656.52Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN2.149e-1656.52Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN2.149e-1656.52Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABPA_XENLA3.666e-1650.00Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP_NEOFI4.787e-1640.14Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME4.787e-1639.02Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP4_HUMAN1.067e-1546.51Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832549 ID=CF832549; Name=CF832549; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTAAATCTTCAATGTCACAAATCCTCAAATACCCCTT
GAAACTCTCAACAGTTAAACCCAAAAAAATAAAAATACAAATAAAAACCA
AAACCAAAACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTAT
AACCGTAACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAA
ATACTGCAGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGA
GGCTAGTTGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCC
TCAGAACCTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGAC
TCGAGCAAGTGCAAAACCTCAGTCTGATCCATCTCCAAAAGCATTCCCGT
AACCTTAGCTGCAGCATCAGGCTCCAGCTGTTCTACAAGTGGGTAGAGAT
TCTCTCCCAGCATCGTCCTCTGCTGCTCAGGAGAAGCATTTGCAAGGGCA
GAAGCCAAAGCCCCAATGGGAACTGGCTGTGAAATAGGGGCATCACGCAG
CGGCATAGCAGCCATGTCACCATATGGAATAGGTAGCATCCCTCCGACAC
CAGGCATGGAAACATCTGGCATGCCACGGCCTGACGGGTAGCGGAAGACA
CGCCCCCTTGGAAGCATCTGTGGCTGCATCATTGGAACATGCTGCTGGTT
CTGCTGCATGCCTGCTGCCCGTCTGCCACTAGGACGCTGACCCTGCTGCC
CTGGCTGAGCTATCGGCACAAAAGAAATTTTGCATGGGAC
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