CF832549

Overview
NameCF832549
Unique NameCF832549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2803 contig Csv1_Contig2803:2..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = -1 
Query:  248 MLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNP--ADQLAS 463
            +LGE L+PLVE+LEP  A K+TGMLLEMD++E+L LL+SPE L  +V EA EVL++      A N   +D LAS
Sbjct:  528 LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKTNLTAPNTHRSDYLAS 601
[Close]
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 46/115 (40.00%), Postives = 57/115 (49.57%), Query Frame = -1 
Query:  344 RGRVFRYPSGRGMPDVSMPGVGGMLPIPYGDM----------AAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESP 658
            RG+V   P G+GM      G G   P+  G M          AA P   A   +    G  A  L  A P QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L L   P
Sbjct:  605 RGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGRGQNAAAP---AGPQEGAAGGVNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLTRKP 716
The following BLAST results are available for this feature:
BLAST of CF832549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PABPX_ARATH4.194e-1255.41Probable polyadenylate-binding protein At2g36660 O... [more]
PABP_ASPNC3.550e-1140.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832549 ID=CF832549; Name=CF832549; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTAAATCTTCAATGTCACAAATCCTCAAATACCCCTT
GAAACTCTCAACAGTTAAACCCAAAAAAATAAAAATACAAATAAAAACCA
AAACCAAAACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTAT
AACCGTAACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAA
ATACTGCAGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGA
GGCTAGTTGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCC
TCAGAACCTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGAC
TCGAGCAAGTGCAAAACCTCAGTCTGATCCATCTCCAAAAGCATTCCCGT
AACCTTAGCTGCAGCATCAGGCTCCAGCTGTTCTACAAGTGGGTAGAGAT
TCTCTCCCAGCATCGTCCTCTGCTGCTCAGGAGAAGCATTTGCAAGGGCA
GAAGCCAAAGCCCCAATGGGAACTGGCTGTGAAATAGGGGCATCACGCAG
CGGCATAGCAGCCATGTCACCATATGGAATAGGTAGCATCCCTCCGACAC
CAGGCATGGAAACATCTGGCATGCCACGGCCTGACGGGTAGCGGAAGACA
CGCCCCCTTGGAAGCATCTGTGGCTGCATCATTGGAACATGCTGCTGGTT
CTGCTGCATGCCTGCTGCCCGTCTGCCACTAGGACGCTGACCCTGCTGCC
CTGGCTGAGCTATCGGCACAAAAGAAATTTTGCATGGGAC
back to top