CF832555

Overview
NameCF832555
Unique NameCF832555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.980e-20
Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  102 EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGGGEGKTSG 243          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.980e-20
Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = -2
Query:  380 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 808
            +K   +   G   G  +  G +  + +GN LP+ +IP G  + N+E  +G  G LARA+G  A +IS   +  +  VKLPSG  ++I   C A +GQV   G   K L +AG+   ++  KR   P VRGVAMNPV+HPHGGG
Sbjct:   98 EKRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNIPLGTAIHNIEITLGKGGQLARAAGAVAKLIS--KEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGS--KRWLGKR---PVVRGVAMNPVDHPHGGG 233          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SODGM (50S ribosomal protein L2 OS=Sodalis glossinidius (strain morsitans) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 57/149 (38.26%), Postives = 82/149 (55.03%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G+ +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + I S CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGEQIQSGVDAAIKAGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIQSECRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SHEWM (50S ribosomal protein L2 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 56/149 (37.58%), Postives = 83/149 (55.70%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +AA+GM  G  +  G  A + VGN LP+R+IP G+VV  VE   G    +AR++G Y  +++   D +   ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNP++HPHGGG  +  G
Sbjct:  100 ERRYILAAKGMQAGDKIQSGIDAEIKVGNALPLRNIPVGSVVHAVEMKPGKGAQIARSAGTYVQVVAR--DGEYATLRLRSGEMRKVPVDCRATMGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPIDHPHGGGEGRTSG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SHESH (50S ribosomal protein L2 OS=Shewanella sediminis (strain HAW-EB3) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 57/149 (38.26%), Postives = 83/149 (55.70%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +AA+GM  G  +  G  A + VGN LP+R+IP G+VV  VE   G    +AR++G Y  +++   D +   ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+HPHGGG  +  G
Sbjct:  100 ERRYILAAKGMQAGDPIQSGIDAEIKVGNALPLRNIPIGSVVHAVEMKPGKGAQIARSAGTYVQVVAR--DGEYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_CHLT3 (50S ribosomal protein L2 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 58/167 (34.73%), Postives = 88/167 (52.69%), Query Frame = -2
Query:  320 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 808
            +K   +A  G+  G  + CG +A + VGN LP+++IP G  V N+E   G  G +AR++G YAV+++   + D   +K+PSG  + +   C+A +G +   G  E   L  G A       R+ W    P+ RG+AMNPV+HP GGG  +           +P GQK
Sbjct:  100 EKRYILAPNGIKVGDLIECGPEADIKVGNALPLKNIPVGIEVHNIEMRPGKGGQMARSAGSYAVLVA--KEGDYATLKMPSGELRKVRVECKATVGVI---GNLEHENLSLGKA------GRSRWLGIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQK 255          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SALTY (50S ribosomal protein L2 OS=Salmonella typhimurium GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SALTI (50S ribosomal protein L2 OS=Salmonella typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SALSV (50S ribosomal protein L2 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SALPK (50S ribosomal protein L2 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
The following BLAST results are available for this feature:
BLAST of CF832555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BORBU1.980e-2038.9350S ribosomal protein L2 OS=Borrelia burgdorferi G... [more]
RK2_PELHO1.980e-2040.5650S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RL2_SODGM2.586e-2038.2650S ribosomal protein L2 OS=Sodalis glossinidius (... [more]
RL2_SHEWM2.586e-2037.5850S ribosomal protein L2 OS=Shewanella woodyi (str... [more]
RL2_SHESH2.586e-2038.2650S ribosomal protein L2 OS=Shewanella sediminis (... [more]
RL2_CHLT32.586e-2034.7350S ribosomal protein L2 OS=Chloroherpeton thalass... [more]
RL2_SALTY3.377e-2037.5850S ribosomal protein L2 OS=Salmonella typhimurium... [more]
RL2_SALTI3.377e-2037.5850S ribosomal protein L2 OS=Salmonella typhi GN=rp... [more]
RL2_SALSV3.377e-2037.5850S ribosomal protein L2 OS=Salmonella schwarzengr... [more]
RL2_SALPK3.377e-2037.5850S ribosomal protein L2 OS=Salmonella paratyphi A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832555 ID=CF832555; Name=CF832555; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTACTTAATTCGATGAAGGCATCCATTAATATCTC
CAAAAATATCAAAATCAACTAAAGTTTTGGATAAGAGCAAATTAAGCTAA
ACTTTAAGCCAACATAATTTAACATCAGGATCATCCCAGAGATCCAAATC
TGAACAAATTTTTCCAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAG
ATCGCGATAGAGAGACGATTTGTGGTAACACAAAGGATTTAAGCCTTGTC
GGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCC
TGGCTGCAATAAGACCAACCTTCTGGCCAGGGGGAGCATCACGCCTAACA
GTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTC
CACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCA
CTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTC
CTCCCTCCGCCGGCAACCTGCCCAATCATAGCTCTGCAGCCACTTGGAAT
AATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGG
GGTTATGACTGATGATAACGGCATAATCACCAGAAGCTCTAGCGAGAACA
CCGCGATCACCAACATGATGCTCAACGTTGCAAACGACAGCTCCTTCAGG
GATAGATCTAACGGGCAACACATTACCAACCATCAGAGTGGCTTTCTTGC
CGCAGTACACGAACTGACCCGTGTACATACCCTCGGCGGCAATGAAAAGC
TCCTTTTGTTTCATG
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