CF832555

Overview
NameCF832555
Unique NameCF832555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_PHOLL (50S ribosomal protein L2 OS=Photorhabdus luminescens subsp. laumondii GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A++  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDASIKTGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVLSDCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_PELPD (50S ribosomal protein L2 OS=Pelobacter propionicus (strain DSM 2379) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            +K   +A   +  G  V  G +A +  GN LP+++IP G ++ NVE  +G    LAR++G +A +++   +   ++VKLPSG  +++   C A IGQV      +  L KAG A  ++  KR   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  100 EKRYILAPLDLKVGDTVLSGPEADIKPGNALPLKAIPLGTIIHNVELKLGKGAQLARSAGTFAQLMA--KEGRYSQVKLPSGEVRMVLQDCYATIGQVGNVDHEKVSLGKAGRA--RWLGKR---PKVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_KLEP7 (50S ribosomal protein L2 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_KLEP3 (50S ribosomal protein L2 OS=Klebsiella pneumoniae (strain 342) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_GEOUR (50S ribosomal protein L2 OS=Geobacter uraniireducens (strain Rf4) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            +K   IA   +  G  V  G  A +  GN LP+RSIP G ++ N+E  +G    LAR++G +A +++   ++   +VKLPSG  +++   C A +GQV         + KAG +  ++  KR   PKVRGVAMNPV+HPHGGG  +  G
Sbjct:  100 EKRYIIAPLDLKVGDTVISGPSADIKPGNALPIRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEDKYAQVKLPSGEVRMVLLDCIATVGQVGNIDHENVSIGKAGRS--RWLGKR---PKVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_ERWT9 (50S ribosomal protein L2 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G +AR++G Y  I++      T R++  SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQIARSAGTYVQIVAREGSYVTLRLR--SGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_ENT38 (50S ribosomal protein L2 OS=Enterobacter sp. (strain 638) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = -2
Query:  380 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 808
            +K   +A  G+  GQ +  G +A + VGN LP+R+IP G ++ N+E + G    + R++G  A +++   + D   V+LPSG  ++ P  CRA IGQV         + KAG A           P VRGV MNPV+HPHGGG
Sbjct:  100 EKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARW-----LGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.410e-20
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = -2
Query:  380 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 808
            +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   98 EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 233          
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERPY (50S ribosomal protein L2 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241          
The following BLAST results are available for this feature:
BLAST of CF832555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PHOLL3.377e-2037.5850S ribosomal protein L2 OS=Photorhabdus luminesce... [more]
RL2_PELPD3.377e-2039.6050S ribosomal protein L2 OS=Pelobacter propionicus... [more]
RL2_KLEP73.377e-2037.5850S ribosomal protein L2 OS=Klebsiella pneumoniae ... [more]
RL2_KLEP33.377e-2037.5850S ribosomal protein L2 OS=Klebsiella pneumoniae ... [more]
RL2_GEOUR3.377e-2038.9350S ribosomal protein L2 OS=Geobacter uraniireduce... [more]
RL2_ERWT93.377e-2037.5850S ribosomal protein L2 OS=Erwinia tasmaniensis (... [more]
RL2_ENT383.377e-2037.5850S ribosomal protein L2 OS=Enterobacter sp. (stra... [more]
RL2_DESAP3.377e-2038.4650S ribosomal protein L2 OS=Desulforudis audaxviat... [more]
RK2_CUCSA4.410e-2036.7350S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RL2_YERPY5.760e-2036.9150S ribosomal protein L2 OS=Yersinia pseudotubercu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832555 ID=CF832555; Name=CF832555; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTACTTAATTCGATGAAGGCATCCATTAATATCTC
CAAAAATATCAAAATCAACTAAAGTTTTGGATAAGAGCAAATTAAGCTAA
ACTTTAAGCCAACATAATTTAACATCAGGATCATCCCAGAGATCCAAATC
TGAACAAATTTTTCCAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAG
ATCGCGATAGAGAGACGATTTGTGGTAACACAAAGGATTTAAGCCTTGTC
GGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCC
TGGCTGCAATAAGACCAACCTTCTGGCCAGGGGGAGCATCACGCCTAACA
GTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTC
CACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCA
CTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTC
CTCCCTCCGCCGGCAACCTGCCCAATCATAGCTCTGCAGCCACTTGGAAT
AATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGG
GGTTATGACTGATGATAACGGCATAATCACCAGAAGCTCTAGCGAGAACA
CCGCGATCACCAACATGATGCTCAACGTTGCAAACGACAGCTCCTTCAGG
GATAGATCTAACGGGCAACACATTACCAACCATCAGAGTGGCTTTCTTGC
CGCAGTACACGAACTGACCCGTGTACATACCCTCGGCGGCAATGAAAAGC
TCCTTTTGTTTCATG
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