CF832555

Overview
NameCF832555
Unique NameCF832555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERPS (50S ribosomal protein L2 OS=Yersinia pseudotuberculosis GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERPP (50S ribosomal protein L2 OS=Yersinia pestis (strain Pestoides F) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERPN (50S ribosomal protein L2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERPG (50S ribosomal protein L2 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERPE (50S ribosomal protein L2 OS=Yersinia pestis GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERPB (50S ribosomal protein L2 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERPA (50S ribosomal protein L2 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_YERP3 (50S ribosomal protein L2 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG +       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVQADCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SHISS (50S ribosomal protein L2 OS=Shigella sonnei (strain Ss046) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
[Close]
BLAST of CF832555 vs. ExPASy Swiss-Prot
Match: RL2_SHIFL (50S ribosomal protein L2 OS=Shigella flexneri GN=rplB PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = -2 
Query:  362 QKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 808
            ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + + CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGGG  ++ G
Sbjct:  100 ERRYILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRNFG 241
The following BLAST results are available for this feature:
BLAST of CF832555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_YERPS5.760e-2036.9150S ribosomal protein L2 OS=Yersinia pseudotubercu... [more]
RL2_YERPP5.760e-2036.9150S ribosomal protein L2 OS=Yersinia pestis (strai... [more]
RL2_YERPN5.760e-2036.9150S ribosomal protein L2 OS=Yersinia pestis bv. An... [more]
RL2_YERPG5.760e-2036.9150S ribosomal protein L2 OS=Yersinia pestis bv. An... [more]
RL2_YERPE5.760e-2036.9150S ribosomal protein L2 OS=Yersinia pestis GN=rpl... [more]
RL2_YERPB5.760e-2036.9150S ribosomal protein L2 OS=Yersinia pseudotubercu... [more]
RL2_YERPA5.760e-2036.9150S ribosomal protein L2 OS=Yersinia pestis bv. An... [more]
RL2_YERP35.760e-2036.9150S ribosomal protein L2 OS=Yersinia pseudotubercu... [more]
RL2_SHISS5.760e-2037.5850S ribosomal protein L2 OS=Shigella sonnei (strai... [more]
RL2_SHIFL5.760e-2037.5850S ribosomal protein L2 OS=Shigella flexneri GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832555 ID=CF832555; Name=CF832555; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTACTTAATTCGATGAAGGCATCCATTAATATCTC
CAAAAATATCAAAATCAACTAAAGTTTTGGATAAGAGCAAATTAAGCTAA
ACTTTAAGCCAACATAATTTAACATCAGGATCATCCCAGAGATCCAAATC
TGAACAAATTTTTCCAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAG
ATCGCGATAGAGAGACGATTTGTGGTAACACAAAGGATTTAAGCCTTGTC
GGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCC
TGGCTGCAATAAGACCAACCTTCTGGCCAGGGGGAGCATCACGCCTAACA
GTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTC
CACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCA
CTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTC
CTCCCTCCGCCGGCAACCTGCCCAATCATAGCTCTGCAGCCACTTGGAAT
AATCTTTTTGGCACCAGATGGAAGCTTGACCCTGGTGGTGTCATTATCGG
GGTTATGACTGATGATAACGGCATAATCACCAGAAGCTCTAGCGAGAACA
CCGCGATCACCAACATGATGCTCAACGTTGCAAACGACAGCTCCTTCAGG
GATAGATCTAACGGGCAACACATTACCAACCATCAGAGTGGCTTTCTTGC
CGCAGTACACGAACTGACCCGTGTACATACCCTCGGCGGCAATGAAAAGC
TCCTTTTGTTTCATG
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