CF832564

Overview
NameCF832564
Unique NameCF832564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10472 contig Csv1_Contig10472:771..1370. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30_MOUSE (60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 464
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30_MACFA (60S ribosomal protein L30 OS=Macaca fascicularis GN=RPL30 PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 464
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30_HUMAN (60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 464
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30_CHICK (60S ribosomal protein L30 OS=Gallus gallus GN=RPL30 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 464
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30_BOVIN (60S ribosomal protein L30 OS=Bos taurus GN=RPL30 PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 464
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30_ICTPU (60S ribosomal protein L30 OS=Ictalurus punctatus GN=rpl30 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.022e-37
Identity = 71/100 (71.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 470
            ESIN+RL LVMKSGKY LGYK   + +R  K KL++L+NNCP LRKSEIEYYAML+K GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P +
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALRKSEIEYYAMLSKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPDQ 111          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30_SPOFR (60S ribosomal protein L30 OS=Spodoptera frugiperda GN=RpL30 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.278e-37
Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 464
            ESIN+RLALVMKSGKY LGYK  L++LR  K KL++++ N PPLRKSEIEYYA+LAK GVHHY+GNN++LGTACGKY+RV  L+I DPGDSDII +LP
Sbjct:   12 ESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 109          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30_BRABE (60S ribosomal protein L30 OS=Branchiostoma belcheri GN=RPL30 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.885e-37
Identity = 73/100 (73.00%), Postives = 84/100 (84.00%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 470
            ESIN+RL LVMKSGKY LG K  L+ LR  K KLI+++NN P LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKYFRV  L+I DPGDSDII+S+P E
Sbjct:    9 ESINSRLQLVMKSGKYVLGLKETLKVLRQGKAKLIIIANNTPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYFRVCTLAITDPGDSDIIRSMPAE 108          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30B_SCHPO (60S ribosomal protein L30-2 OS=Schizosaccharomyces pombe GN=rpl30b PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.995e-33
Identity = 64/94 (68.09%), Postives = 81/94 (86.17%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 452
            ++IN++LAL MKSGKY LGYK+ L++LRS K KLIL++ N PPLRKSE+EYYAML++  VHHY+GNN+DLGTACGK FRV  L++ID GDSDI+
Sbjct:   22 DTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115          
BLAST of CF832564 vs. ExPASy Swiss-Prot
Match: RL30A_SCHPO (60S ribosomal protein L30-1 OS=Schizosaccharomyces pombe GN=rpl30a PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.606e-33
Identity = 65/94 (69.15%), Postives = 78/94 (82.98%), Query Frame = 3
Query:  171 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 452
            ++IN +LAL MKSGKY LGYK+ L++LRS K KLIL++ NCPPLRKSE+EYYAML+K  VHHY G N+DLGTACGK FRV  L+I D GDSDI+
Sbjct:   14 DTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107          
The following BLAST results are available for this feature:
BLAST of CF832564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30_MOUSE7.080e-3974.4960S ribosomal protein L30 OS=Mus musculus GN=Rpl30... [more]
RL30_MACFA7.080e-3974.4960S ribosomal protein L30 OS=Macaca fascicularis G... [more]
RL30_HUMAN7.080e-3974.4960S ribosomal protein L30 OS=Homo sapiens GN=RPL30... [more]
RL30_CHICK7.080e-3974.4960S ribosomal protein L30 OS=Gallus gallus GN=RPL3... [more]
RL30_BOVIN7.080e-3974.4960S ribosomal protein L30 OS=Bos taurus GN=RPL30 P... [more]
RL30_ICTPU1.022e-3771.0060S ribosomal protein L30 OS=Ictalurus punctatus G... [more]
RL30_SPOFR2.278e-3772.4560S ribosomal protein L30 OS=Spodoptera frugiperda... [more]
RL30_BRABE3.885e-3773.0060S ribosomal protein L30 OS=Branchiostoma belcher... [more]
RL30B_SCHPO1.995e-3368.0960S ribosomal protein L30-2 OS=Schizosaccharomyces... [more]
RL30A_SCHPO2.606e-3369.1560S ribosomal protein L30-1 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832564 ID=CF832564; Name=CF832564; organism=Citrus sinensis; type=EST; length=600bp
GTTTGTTACTTCGCTATCCTCCCGCAAAGTCTTTTTGGTGTAAGCTCTAA
ACCCCACCCTAAAGCCCATTTCATGTTTTTCTATTGCCTCTAAATTTTCT
GTGTCATCTGATTTTCCAGGCAACCAAACAGTCGAAAATGGTTACAAGCA
AGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGCTTGCTCTTGTG
ATGAAGAGTGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCT
CAGAAGCTCTAAGGGAAAGTTGATTCTTTTGTCAAATAATTGCCCACCGT
TGAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTA
CACCACTACAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTA
CTTCCGTGTGTCTTGCTTGAGCATTATCGATCCAGGTGATTCTGATATCA
TCAAGTCACTTCCGGGAGAGCACTGAGCCTGATTCAGAGTTCAAACCTGC
ATCTTAGTGTTCTGATTGTTTAATTGTGGAATGCTGTTTCTCAATTGAAA
TTTTCTTTTGAACATCCTCGAGATACACTTTCTTAAAAAAAAAAAAAAAA
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