CF832574

Overview
NameCF832574
Unique NameCF832574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:92..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832574 vs. ExPASy Swiss-Prot
Match: METE_PYRFU (Probable methylcobalamin:homocysteine methyltransferase OS=Pyrococcus furiosus GN=metE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 59/209 (28.23%), Postives = 97/209 (46.41%), Query Frame = 1
Query:   88 QSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 714
            ++ T   +K  +TGP TI  WSF      +      +A  I  E++ LEK G   +Q+DE A+          H   +  AV +      G++   ++  H+CYSN+N +     ++      +E +  + + +   ++       +G GV D+H+PR+ S EEI   I K+   LE   +++NPDCGLK          L NMV A +
Sbjct:  120 ENTTREIVKIPITGPYTIAEWSFNEYYPDKESFVMDLAEIINKELKVLEKHGAKFVQLDEPAMLN--------HPSEVPLAVDAINRAVKGIK--MKVGLHVCYSNYNLLADYFDEIKVTQFALEFANRNFRDMDFLKK--LSNKELGFGVVDVHNPRVESVEEIRQAIKKVFTYLEPEWVYINPDCGLKLLDRKIAYQKLVNMVQAVR 316          
BLAST of CF832574 vs. ExPASy Swiss-Prot
Match: METE_PYRAB (Probable methylcobalamin:homocysteine methyltransferase OS=Pyrococcus abyssi GN=metE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 60/209 (28.71%), Postives = 95/209 (45.45%), Query Frame = 1
Query:   88 QSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 714
            ++ T   +K  +TGP TI  WSF      +      +A  I  E++ LE+ G   IQ+DE A+          H   +  AV +      G++   ++  H+CYSN+  +     D+      +E +    + +   ++    G  +G GV D+H+PRI + +EI   I K    LE   L++NPDCGLK          L NMV A +
Sbjct:  120 ENTTREIVKVPITGPYTIAEWSFNEYYPDKESFVMDLAKIINKELKTLEEHGATYIQLDEPAMLN--------HPDEVPLAVEAINRAVKGIK--IKVGLHVCYSNYYLLADYFDDIRVTQFALEFANRQFRDMDFLKK--LSGKELGFGVVDVHNPRIETVDEIVRAIKKAFNYLEPEWLYINPDCGLKLLDRRIAYQKLVNMVKAVR 316          
BLAST of CF832574 vs. ExPASy Swiss-Prot
Match: METE_PYRHO (Probable methylcobalamin:homocysteine methyltransferase OS=Pyrococcus horikoshii GN=metE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 58/209 (27.75%), Postives = 95/209 (45.45%), Query Frame = 1
Query:   88 QSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAK 714
            ++ T   +K  +TGP TI  WSF      +      +A  I  E++ LE  G   IQ+DE A+          H   +  AV +      G++   ++  H+CYSN+  +     ++      +E +    + +   ++       +G GV D+H+PRI S EEI   I K+   +E  +L++NPDCG+K          L NMV A +
Sbjct:  120 KNTTREVVKIPITGPYTIAEWSFNEYYPDKESFIMDLAKIINKELKMLENHGALYIQLDEPAMLN--------HPDEVPLAVEAINKAVKGIK--IKVGLHVCYSNYYLLADYFDEIRVTQFALEFANRQFRDMDFLKK--LSNKELGFGVVDVHNPRIESVEEIVKAIKKVFEYVEPELLYINPDCGMKLLDRNIAYNKLVNMVKATE 316          
BLAST of CF832574 vs. ExPASy Swiss-Prot
Match: METE_THEAC (Probable methylcobalamin:homocysteine methyltransferase OS=Thermoplasma acidophilum GN=metE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 67/229 (29.26%), Postives = 103/229 (44.98%), Query Frame = 1
Query:   97 TARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINV-------IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHS-IIDMDADVITIENSRSDE----------------KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL-ETNILWVNPDCGLKTRKYTEVKPALSNMVAA 708
            T +P+K  +TGP T++ WSF      R +   + A  I +E++D+      V       IQIDE A         + H   +D  V S   +  GV    +I  H+CYS+   +++  I D+  D   +E S  D                 K  +   E ++    IG GV D+H   +   E I DRIN  L ++ + +++ +NPDCGL+TR     +  L NMV A
Sbjct:  117 TKKPLKVPITGPYTMMEWSFNDYYDSREDLAMEFARIINEELKDIASVWKQVSGGRRLEIQIDEPA--------TTTHPDEMDIVVDSINRSVQGVDG--EISMHVCYSSDYRLLYDRIPDLKIDGYNLEYSNRDTLERGLTDDKRVGFQDLKYFAQINESLQRKKFIGIGVTDVHIDYVEPVELIEDRINYALKIIGDPDLVRINPDCGLRTRSREIGEQKLRNMVMA 335          
BLAST of CF832574 vs. ExPASy Swiss-Prot
Match: METE_THEVO (Probable methylcobalamin:homocysteine methyltransferase OS=Thermoplasma volcanium GN=metE PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 63/229 (27.51%), Postives = 107/229 (46.72%), Query Frame = 1
Query:   97 TARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINV-------IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENSRSDE----------------KLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL-ETNILWVNPDCGLKTRKYTEVKPALSNMVAA 708
            T +P+K  +TGP T+++WSF  +   RHE   + A  I +E+++++     +       IQIDE A         + H   +D  V S   +  G+    ++  H+CYS ++  +   I +++ D   +E S  D                 K  +   E ++    IG GV D+H   I   + I DRI  +L ++ +  ++ +NPDCGL+TR  +  +  L NMV A
Sbjct:  117 TKKPIKIPITGPYTMMDWSFNDHYNDRHELAMEFARIINEELKEIQSKWPYISNGRKLEIQIDEPA--------TTTHPDEMDIVVDSVNKSIEGID--AELSLHVCYSRDYRLLYDRIPELNIDGYNLEYSNRDTTDLGVEDAKRPGFQDIKYFNEVNESLQRKKFIGVGVTDVHIDFIEPVKLIEDRIKYVLNIIKDPELVKLNPDCGLRTRSRSIGEQKLRNMVIA 335          
BLAST of CF832574 vs. ExPASy Swiss-Prot
Match: METE_METTH (Probable methylcobalamin:homocysteine methyltransferase OS=Methanobacterium thermoautotrophicum GN=metE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 54/207 (26.09%), Postives = 95/207 (45.89%), Query Frame = 1
Query:  100 ARPMKGMLTGPVTILNWSFVR---NDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAA 711
            +R +KG++TGP T++  S +    + Q R      +A  +K E + L+ AG  +IQIDE  L  G+          +D       I +       ++  H+C  +  +++  ++    DV+ +E +     L  V  E  +   G+G G  D  + R+ S EEI + I +   ++    L+++PDCG++          L NMV AA
Sbjct:  112 SRGVKGIITGPSTMIYASRIEGFYDPQKRDRAVMDMAGVLKIEAKHLQDAGAAMIQIDEPFLSTGI----------VDMKTAGRAIDHIAAGLDIEVSLHVC-GDIRNVLSDLLRFKVDVLDLEFAGRPSNL-EVLEEKWRGDKGVGFGCVDTTTERVESMEEIRNLIKRGADIVGEENLYIDPDCGMRKLPRKAAFSKLRNMVMAA 306          
The following BLAST results are available for this feature:
BLAST of CF832574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 286
Match NameE-valueIdentityDescription
METE_PYRFU6.214e-1728.23Probable methylcobalamin:homocysteine methyltransf... [more]
METE_PYRAB3.084e-1628.71Probable methylcobalamin:homocysteine methyltransf... [more]
METE_PYRHO2.611e-1527.75Probable methylcobalamin:homocysteine methyltransf... [more]
METE_THEAC3.410e-1529.26Probable methylcobalamin:homocysteine methyltransf... [more]
METE_THEVO3.770e-1427.51Probable methylcobalamin:homocysteine methyltransf... [more]
METE_METTH4.609e-1226.09Probable methylcobalamin:homocysteine methyltransf... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832574 ID=CF832574; Name=CF832574; organism=Citrus sinensis; type=EST; length=716bp
TATGGATCTCCCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCG
TCCCAAGGCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACAG
CTCGCCCAATGAAAGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGG
TCCTTTGTTAGAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGC
TTTGGCCATCAAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACG
TTATTCAAATTGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAA
TCTGAGCATGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCAC
CAACTGTGGCGTCCAGGACACTACCCAGATCCACACCCACATGTGCTACT
CCAACTTCAACGACATTATCCACTCAATTATCGACATGGATGCTGATGTG
ATCACCATTGAGAACTCTCGTTCTGATGAGAAGCTCCTGTCTGTCTTCCG
TGAGGGAGTCAAGTATGGTGCTGGAATTGGCCCTGGTGTGTATGACATCC
ACTCTCCAAGAATACCATCAACTGAAGAAATTGCTGACAGAATCAACAAG
ATGCTTGCTGTGCTAGAAACCAACATTTTGTGGGTTAACCCTGACTGTGG
TCTTAAGACTCGCAAGTACACTGAGGTGAAGCCAGCCCTCTCAAACATGG
TCGCTGCTGCCAAGCT
back to top