CF832579

Overview
NameCF832579
Unique NameCF832579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 50/148 (33.78%), Postives = 81/148 (54.73%), Query Frame = -1
Query:  288 RILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 710
            R+ +E K+ ++D P    A P        +++ W   I G   + + GGV+ + + F  DYP KPPK  F    FHPN+  +G++CL IL E+  W P++TI  VLL I  LL +PNP  P      H++ T++ +Y+   ++ ++ Y
Sbjct:    8 RLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVY 155          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = -1
Query:  285 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 689
            DL K   +      + + M  +     GP DS Y GGV+ + +  P  YP+K P V F TK++HPN++  +GS+CLD++ + WSP   +  V  + +  LL  PNP DPL  E A +   DR  YE   + + +KYA
Sbjct:   11 DLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEKYA 147          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = -1
Query:  285 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 689
            D+ K   +      + + M  +     GP DS Y GGV+ + +  P  YP+K P V F TK++HPN++  +GS+CLD++ + WSP   +  V  + +  LL  PNP DPL  E A +   DR  YE   + + +KYA
Sbjct:   11 DMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEKYA 147          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = -1
Query:  285 IMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVA---------------FRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 614
            I GP  +PYAGG F + +  P  YPF+PPKV                F T+++HPNI+S  G+ICLDILK++W+ +LT+  VLLS+ ++L  P P DP    +A  +  +   +  TA  WT  +A
Sbjct:   57 IKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFA 182          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = -1
Query:  306 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 710
            R+ K++ +L      S S     +D+ +++ +I  P D  Y  G F+ T    P YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN +DPL  + A + + +   +ET  R
Sbjct:   34 RLHKDISELNLPSSCSISFPNGKDDLMNFEVSIK-PDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVR 167          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 48/142 (33.80%), Postives = 78/142 (54.93%), Query Frame = -1
Query:  285 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 710
            R++KELK+L        +  P  ED+ + +A + GP  +PY GG F   +    D+P  PPK  F TK+FHPN++  G IC++ LK+ W+  L +  +LL+I  LL  PN +  L  + + +   + + Y   A+ +T  +A
Sbjct:   13 RVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAKLFTSIHA 154          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 47/122 (38.52%), Postives = 71/122 (58.20%), Query Frame = -1
Query:  285 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 647
            V E++F W+  I GP +S Y    F + I    DYP+  PKV F T + H N+N  G ICL+ILK+  W+ +L I  ++ SI  LL  PNP+DP   E+A +Y+ D+  Y+   R + + ++
Sbjct:   32 VDENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHS 153          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = -1
Query:  306 LKELKDLQK-DPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 704
            L+  KD+ + + PT C+       D+ ++  +I  P D  Y    F  TI+ P  YP+ PPKV   T V+HPNI+  G +CL+IL++ W P L I  V+  + +L  +PNPDDPL  + A +   ++  +E   R
Sbjct:   80 LRAQKDIDEMEVPTGCAVSFKDTNDILNFNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVR 213          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 45/123 (36.59%), Postives = 70/123 (56.91%), Query Frame = -1
Query:  285 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 647
            + + M  +    +GP D+PY  GV+ + +  P +YP+K P + F  K+FHPNI+ ++GSICLD++   WSP   +  ++   I  LL +PN  DPL  E A +   D+  YE   + +  KYA
Sbjct:   25 INDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKEYIDKYA 147          
BLAST of CF832579 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 46/137 (33.58%), Postives = 73/137 (53.28%), Query Frame = -1
Query:  285 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 689
            DL K   +      + + M  +     GP DS Y GGV+ V +     YP+K P + F  K++HPN++  +GS+CLD++ + WSP   +  +  + +  LL  PNP DPL  E A +   D+N YE   + + ++YA
Sbjct:   11 DLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYA 147          
The following BLAST results are available for this feature:
BLAST of CF832579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
UBC9_DICDI4.580e-2033.78Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC5_ARATH4.580e-2036.50Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_ARATH4.580e-2035.77Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC21_CAEEL4.580e-2039.68Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
RCE1_ARATH4.580e-2035.56NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBE2S_DICDI7.812e-2033.80Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBC1_MIMIV7.812e-2038.52Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC12_DICDI1.740e-1935.56NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC8_YEAST2.273e-1936.59Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC4_WHEAT2.273e-1933.58Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832579 ID=CF832579; Name=CF832579; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTTTAGAAAGAAAGATTTTTATCATTCAGAATGGACGTAC
AAATTTGGCTGACCAAGTGACATTATCAGAACACATTTGATTGACCAAAG
TGACATTATCCATACAACAATTAAGAAGCAACCCGTTTCTCCTTTCCAAT
TCGGGGGATGTAGTGGACCTTTCTTATGGTCCACTTTTTAGGATTGAACA
GACAGAATATTCATACATTAACTCGAAACCAGAATTAAAAAGAAAAGGAA
CCCCCTCACACACCATAACCCAGGTTTAGCCCATGGCATACTTCTGGGTC
CAGCTCCTTGCAGTTGTCTCGTACTTGTTCCTGTCGGTCTTGTACATGTG
AGCAATTTCTGGTACCAACGGATCATCGGGATTTGGATCCGTCAATAATG
AACAGATTGATAGCAACACCTTGGAAATGGTAAGAGCAGGACTCCATTGT
TCCTTCAAGATGTCAAGGCAAATGCTCCCATTGCTATTTATGTTAGGATG
AAATACCTTTGTCCTGAATGCTACCTTGGGAGGCTTGAATGGATAGTCTG
GGGGAAAATGGATGGTAACTAGAAAAACACCCCCAGCATACGGACTATCT
GGAGGACCCATGATTGTCGCCTGCCAATGAAACATGTCTTCAGCAACAGG
ACCGGCACTGCATGATGTAGGAGGATCCTTCTGCAAATCTTTGAGCTCCT
TCAAGATCCG
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