CF832591

Overview
NameCF832591
Unique NameCF832591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:536..967. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQLKKVLC+ VAVGN+ MEE  +   + M+ NFLVSLLKKNWQNV  L +KSTMGPS RI+
Sbjct:  152 KSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  152 KSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  152 KSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  152 KSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 39/66 (59.09%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +STVKFQLKKVLC+ VAVG++ + E+++  N+  S+NFLVSLLKK WQN++ LY+K++MGPS+R++
Sbjct:  152 KSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  152 KSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.235e-19
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+KKVLC+ VAVG++ M E ++  N+ ++VNFLVSLLKKNWQNVR LY+KS+MG   R++
Sbjct:  151 KSTIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMGKPQRLY 216          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.405e-18
Identity = 39/66 (59.09%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  152 KSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.835e-18
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            RST+KFQLKKVLC+ VAVGN+ MEE  +   + MSVNF VSLLKKNWQNV  L +KS+MGP+ R++
Sbjct:  152 RSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQLKKVLC+GVAVG++ M E+Q+  N+ ++VNFLVSLLKK WQN+  L +KSTMG  +R++
Sbjct:  151 KSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216          
The following BLAST results are available for this feature:
BLAST of CF832591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL10A_CANAL3.697e-1966.6760S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL10A_RAT6.306e-1960.6160S ribosomal protein L10a OS=Rattus norvegicus GN... [more]
RL10A_MOUSE6.306e-1960.6160S ribosomal protein L10a OS=Mus musculus GN=Rpl1... [more]
RL10A_HUMAN6.306e-1960.6160S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_DICDI6.306e-1959.0960S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_BOVIN6.306e-1960.6160S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_ICTPU8.235e-1960.6160S ribosomal protein L10a OS=Ictalurus punctatus ... [more]
RL10A_MACFA1.405e-1859.0960S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL1_YEAST1.835e-1865.1560S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL1B_SCHPO2.396e-1860.6160S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832591 ID=CF832591; Name=CF832591; organism=Citrus sinensis; type=EST; length=432bp
CGGTCAACAGTGAAGTTCCAATTGAAGAAGGTGCTTTGCATGGGAGTTGC
TGTTGGAAACCTTTCAATGGAGGAGAAGCAGATCTTCCAGAATGTTCAAA
TGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAAAAACTGGCAGAATGTC
AGGTGCCTCTATCTGAAGAGTACCATGGGTCCTTCAAACCGCATCTTTTA
AGAAATTCTGCTTTATGTTGGAGTTTTGTAGGGAAAACCTAGTGTGATCT
TATTATACCCAAAATGTCTTTCTTTGAATGGTCACAACCTGCAATTTTCT
TTTTCTTTTTCTTTTTCTTTTCTGAATTTAATGCACTAGTAATCTTATAA
TATGGTAGACTTGTACGAATTTTTTTGTTGGAGAGATGTTGAATTGAATC
ATGATTGCTTTCTGTTAAAAAAAAAAAAAAAA
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