CF832596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15 Identity = 52/166 (31.33%), Postives = 92/166 (55.42%), Query Frame = 3 Query: 9 ILSSETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALI 491 + S E +EIP+GV V I I++V+GP G++++ FK+ + L DG ++ ++ + ++ A + T ++N+ GVT+G+RYK++ +Y HFP+ + + I NFLG K + + GV V K K++++++G D ELVS AA + Sbjct: 4 VYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQ-DG-----KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQG--NQLVIENFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14 Identity = 53/176 (30.11%), Postives = 96/176 (54.55%), Query Frame = 3 Query: 27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 551 +++P+ V+ + ++++G G+ SR F+ + ++ +G + +KI ++ T + T S + LI GVTKG+ Y M+ + HFP+ S+ DK I + NFLGEK R +++DG V VK D + ++G D + +AA I + ++++ D R F DGI++ Sbjct: 10 IKLPDDVQATMENNELKIKGKLGEASRIFRDNYVKAYI--EGSS----VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSV-RGDKLI-VENFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14 Identity = 55/183 (30.05%), Postives = 93/183 (50.82%), Query Frame = 3 Query: 18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563 + +EIP+ VKV ++ ++ + KL + F N L+ D ++KI + + + T S + N++ G+ +G++Y+M+ Y+HFP+ S+ K++ I NF GE+ R E++ V VK D L L+G + V +AA I + +K D R F DGIY+ KG Sbjct: 7 ASVIEIPKDVKVGLSGTMLSMTFGNKKLEKKFAD-NYVRLLVEDN-----KIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISKG 177 The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bpback to top |