CF832596

Overview
NameCF832596
Unique NameCF832596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 52/166 (31.33%), Postives = 92/166 (55.42%), Query Frame = 3
Query:    9 ILSSETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALI 491
            + S E +EIP+GV V I        I++V+GP G++++ FK+  +   L  DG     ++ ++ +   ++  A + T    ++N+  GVT+G+RYK++ +Y HFP+   +      + I NFLG K    + +  GV V    K K++++++G D ELVS  AA +
Sbjct:    4 VYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQ-DG-----KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQG--NQLVIENFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14
Identity = 53/176 (30.11%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 551
            +++P+ V+  +    ++++G  G+ SR F+   +  ++  +G +    +KI     ++ T   + T  S  + LI GVTKG+ Y M+  + HFP+  S+   DK I + NFLGEK  R  +++DG  V     VK D + ++G D   +  +AA I +  ++++ D R F DGI++
Sbjct:   10 IKLPDDVQATMENNELKIKGKLGEASRIFRDNYVKAYI--EGSS----VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSV-RGDKLI-VENFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 55/183 (30.05%), Postives = 93/183 (50.82%), Query Frame = 3
Query:   18 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563
            +  +EIP+ VKV ++  ++ +     KL + F   N    L+ D      ++KI     + +    + T  S + N++ G+ +G++Y+M+  Y+HFP+  S+    K++ I NF GE+  R  E++    V     VK D L L+G   + V  +AA I +   +K  D R F DGIY+  KG
Sbjct:    7 ASVIEIPKDVKVGLSGTMLSMTFGNKKLEKKFAD-NYVRLLVEDN-----KIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISKG 177          
The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_PYRAE3.093e-1531.3350S ribosomal protein L6P OS=Pyrobaculum aerophilu... [more]
RL6_PICTO1.175e-1430.1150S ribosomal protein L6P OS=Picrophilus torridus ... [more]
RL6_THEVO4.466e-1430.0550S ribosomal protein L6P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bp
CGGTGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTGAAA
GTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAAGCT
TAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATG
GGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCTCGC
AAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCAT
CACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTC
ACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATC
CGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGG
TGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATG
GGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAA
TGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTATGT
CAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTT
ATGTCACATTATTATCATGAAATTGGTATCAATCTTGCTCTTTTTGCCCT
GTGTTGGGGAAGTCCTTTTATTTTTTT
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