CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL AS ID +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++  +
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASDIDLFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERR 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THLA_CLOD6 (Acetyl-CoA acetyltransferase OS=Clostridium difficile (strain 630) GN=thlA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I  +  A   P+     P  A  KA+  A +    ID  E NEAF+  ++A  + L +D  +VN +GGA+++GHP+GCSGARIL TLL  ++ +
Sbjct:  275 IVSYGTAGVDPKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRR 368          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHIFL (3-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHIF8 (3-ketoacyl-CoA thiolase OS=Shigella flexneri serotype 5b (strain 8401) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 VRSMAVVGCNPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+  AGL  + ID  E+NEAF+  ++   K LGL     E+VN +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  284 PVPATQKALQRAGLTMNDIDLIELNEAFAAQSLPCVKDLGLMDLVDEKVNLNGGAIALGHPLGCSGARISTTLINLMESK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ESCF3 (3-ketoacyl-CoA thiolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ECOLI (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain K12) GN=fadA PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ECOL6 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ECOHS (3-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 (strain HS) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
FADA_ENTS82.763e-1243.303-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
THLA_CLOD64.712e-1239.36Acetyl-CoA acetyltransferase OS=Clostridium diffic... [more]
FADA_SHIFL4.712e-1243.303-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fa... [more]
FADA_SHIF84.712e-1243.303-ketoacyl-CoA thiolase OS=Shigella flexneri serot... [more]
FADA_SHIBS4.712e-1243.303-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADA_SHELP4.712e-1248.753-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADA_ESCF34.712e-1243.303-ketoacyl-CoA thiolase OS=Escherichia fergusonii ... [more]
FADA_ECOLI4.712e-1243.303-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADA_ECOL64.712e-1243.303-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=... [more]
FADA_ECOHS4.712e-1243.303-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
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