CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  578 APSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL--DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVL 802
            AP+ AI K +  A L   Q+D  E+NEAF+  A+A  + LGL  D  +VN +GGA++LGHPLG SGAR++ T L  L
Sbjct:  298 APAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQL 374          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = -1
Query:  587 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAF---SVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 850
            +R  A +   P      P  A  KA+  AGL    I+ +E+NEAF   S+  I +  LL +  E+VN +GGA++LGHPLGCSG+RI  TL+
Sbjct:  267 VRSMAVSGCDPSIMGYGPVPATKKALKRAGLSLDDIELFELNEAFAAQSLPCIKDLGLLDVMDEKVNLNGGAIALGHPLGCSGSRIATTLI 357          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = -1
Query:  587 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAF---SVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 850
            +R  A +   P      P  A  KA+  AGL    I+ +E+NEAF   S+  I +  LL +  E+VN +GGA++LGHPLGCSG+RI  TL+
Sbjct:  267 VRSMAVSGCDPSIMGYGPVPATKKALKRAGLSLDDIELFELNEAFAAQSLPCIKDLGLLDVMDEKVNLNGGAIALGHPLGCSGSRIATTLI 357          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+  AGL    ID  E+NEAF+  ++   K LGL     E+VN +GGA++LGHPLGCSG+RI  TL+ ++  K
Sbjct:  284 PVPATQKALKRAGLTIGDIDLVELNEAFAAQSLPCVKDLGLLDVAEEKVNLNGGAIALGHPLGCSGSRISTTLIHLMEEK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  578 APSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL--DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVL 802
            AP+ AI K +  A L   Q+D  E+NEAF+  A+A  + LGL  D  +VN +GGA++LGHPLG SGAR++ T L  L
Sbjct:  298 APAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQL 374          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ECO24 (3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.791e-11
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL  S I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 VRSMAVVGCDPAIMGYGPVPASKLALKKAGLSVSDIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIM_RAT (3-ketoacyl-CoA thiolase, mitochondrial OS=Rattus norvegicus GN=Acaa2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  AI  A+  AGL    +D  ++NEAF+   +A QK L LDP + N  GGA++LGHPLG SG+RI   L+  LR +
Sbjct:  296 PVPAITGALKKAGLSLKDMDLIDVNEAFAPQFLAVQKSLDLDPSKTNVSGGAIALGHPLGGSGSRITAHLVHELRRR 372          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_THIVI (Acetyl-CoA acetyltransferase OS=Thiocystis violacea GN=phbA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = -1
Query:  587 FADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 841
            F+ A   P    T P  A    +  AG   + +D  E NEAF+  A++  + +G D  +VN +GGA+++GHP+G SGAR+LVTLL
Sbjct:  280 FSSAGVDPAIMGTGPIPASTDCLKKAGWAPADLDLVEANEAFAAQAMSVNQEMGWDLSKVNVNGGAIAIGHPIGASGARVLVTLL 364          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I+  A A   P      P  A  KA+  AGL    +D  E+NEAF+  ++   K LGL     ++VN +GGA++LGHPLGCSG RI  TL+ ++  K
Sbjct:  267 IKAMAVAGCDPSIMGYGPVPATHKALQRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLEMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLMEAK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I+  A A   P      P  A  KA+  AGL    +D  E+NEAF+  ++   K LGL     ++VN +GGA++LGHPLGCSG RI  TL+ ++  K
Sbjct:  267 IKAMAVAGCDPSIMGYGPVPATHKALKRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLDMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLMEAK 363          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PCAF_ACIAD1.371e-1149.35Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_VIBFM1.371e-1142.863-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF11.371e-1142.863-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_AERS41.371e-1147.503-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
CATF_ACIAD1.371e-1149.35Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_ECO241.791e-1142.273-ketoacyl-CoA thiolase OS=Escherichia coli O139:H... [more]
THIM_RAT2.339e-1146.753-ketoacyl-CoA thiolase, mitochondrial OS=Rattus n... [more]
THIL_THIVI2.339e-1141.18Acetyl-CoA acetyltransferase OS=Thiocystis violace... [more]
FADA_VIBCH2.339e-1141.243-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_VIBC32.339e-1141.243-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
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