CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL  S I  +E+NEAF+   +   K LGL     E+VN +GGA++LGHPLGCSGARI  TL+ ++  +
Sbjct:  267 IRAMAVVGCDPSIMGYGPVPATKLALKRAGLSLSDIGLFELNEAFAAQTLPCIKDLGLLEQIDEKVNLNGGAIALGHPLGCSGARISTTLINLMESR 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ERWT9 (3-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.054e-11
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL  + I  +E+NEAF+   +   K LGL     E+VN +GGA++LGHPLGCSGARI  TLL ++  +
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASQLALKRAGLSIADIGVFELNEAFAAQTLPCIKDLGLMDKLDEKVNLNGGAIALGHPLGCSGARISTTLLNLMERR 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  AI  A+  AGL    +D  ++NEAF+   ++ QK L LDP + N  GGA++LGHPLG SG+RI   L+  LR +
Sbjct:  296 PVPAINGALKKAGLSLKDMDLIDVNEAFAPQFLSVQKALDLDPSKTNVSGGAIALGHPLGGSGSRITAHLVHELRRR 372          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  578 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQ--VNAHGGAVSLGHPLGCSGARILVTLLGVL 799
            P  A  KA+  AG+    +   E+NEAF+   ++  K L L  +Q  VN +GGA++LGHPLGCSGARI VTLL  +
Sbjct:  288 PVPATQKALKRAGMSIDDMQTIELNEAFAAQGLSVLKALNLTDKQDIVNINGGAIALGHPLGCSGARITVTLLNAM 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  578 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQ--VNAHGGAVSLGHPLGCSGARILVTLLGVL 799
            P  A  KA+  AG+    +   E+NEAF+   ++  K L L  +Q  VN +GGA++LGHPLGCSGARI VTLL  +
Sbjct:  288 PVPATQKALKRAGMSIEDMQTIELNEAFAAQGLSVLKALNLTDKQDIVNINGGAIALGHPLGCSGARITVTLLNAM 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I+  A A   P      P  A  KA+A AG+    +   E+NEAF+  ++   K LGL     E+VN +GGA++LGHPLGCSG+RI  +L+ ++  K
Sbjct:  267 IKAMAVAGCDPSIMGYGPVPASKKALAQAGITIDDLGVVELNEAFAAQSLPVMKDLGLMDVVDEKVNLNGGAIALGHPLGCSGSRISTSLIHLMEDK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL    ID +E+NEAF+  ++   K LGL     +++N +GGA++LGHPLGCSG+RI  TLL  +  +
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASKLALKRAGLSVQDIDLFELNEAFAAQSLPCIKDLGLLDSIDDKINLNGGAIALGHPLGCSGSRISTTLLNNMERR 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL  + I  +E+NEAF+   +   K LGL     E+VN +GGA++LGHPLGCSGARI  TL+ ++  +
Sbjct:  267 IRAMAVVGCDPSIMGYGPVPATKLALKRAGLSLADIGIFELNEAFAAQTLPCIKDLGLLEQLDEKVNLNGGAIALGHPLGCSGARISTTLINLMESR 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PHOLL (3-ketoacyl-CoA thiolase OS=Photorhabdus luminescens subsp. laumondii GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQK---LLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL    I   E+NEAF+  ++A  K   LL    ++VN +GGA++LGHPLGCSGARI  TLL ++  +
Sbjct:  267 IRSMAAVGCDPSIMGYGPVPATQMALKKAGLVLGDIGVIELNEAFAAQSLACLKGLNLLDSMDDKVNLNGGAIALGHPLGCSGARITTTLLNLMERR 363          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
FADA_PECCP2.339e-1142.273-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
FADA_ERWT93.054e-1142.273-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (s... [more]
THIM_MOUSE5.210e-1145.453-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]
FADA_PSYCK5.210e-1147.373-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PSYA25.210e-1147.373-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]
FADA_PSEHT5.210e-1140.213-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADA_SERP56.805e-1140.213-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_ERWCT6.805e-1141.243-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
FADA_PHOLL8.887e-1141.243-ketoacyl-CoA thiolase OS=Photorhabdus luminescen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
back to top