CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  575 FADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 841
            F      PE     P+ AIPK +   GL+   ID +EINEAF+  A+     LG+D  +VN  GGA++LGHPLGC+GAR + T+L  L+
Sbjct:  305 FQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELK 393          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THLA_STAAR (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0351 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.325e-14
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  587 GFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 844
            GF      P     AP  A+ KA+  +  E S ID +E+NEAF+  ++A  + L L PE+VN  GGA++LGHP+G SGAR+LVTLL
Sbjct:  278 GFGSHGVDPAIMGIAPVDAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLL 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.325e-14
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  A  KA+  AGL  S ID++E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPATQKALKRAGLSISDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THLA_STAAN (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain N315) GN=SA0342 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  587 GFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 844
            GF      P     AP  A+ KA+  +  E S ID +E+NEAF+   +A  + L L PE+VN  GGA++LGHP+G SGAR+LVTLL
Sbjct:  278 GFGSHGVDPSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQLLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLL 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THLA_STAAM (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0354 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  587 GFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 844
            GF      P     AP  A+ KA+  +  E S ID +E+NEAF+   +A  + L L PE+VN  GGA++LGHP+G SGAR+LVTLL
Sbjct:  278 GFGSHGVDPSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQLLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLL 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.952e-14
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  A  KA+  AGL  + ID++E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPATQKALKRAGLSIADIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.035e-14
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  A  KA+  AGL  + ID++E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.035e-14
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  A  KA+  AGL  + ID++E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  A  KA+  AGL  + ID+ E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = -1
Query:  602 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARI 799
            P+ AI KA+   G+   Q+D  EINEAF+ VA+A+ + LG+ PE VN +GGA+++GHPLG SGARI
Sbjct:  293 PANAIKKAVDREGISVEQLDVVEINEAFAAVALASARELGIAPELVNVNGGAIAVGHPLGMSGARI 358          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
THIK_YEAST1.014e-1444.943-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
THLA_STAAR1.325e-1447.67Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
FADA_PSESM1.325e-1447.373-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
THLA_STAAN1.730e-1447.67Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAM1.730e-1447.67Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
FADA_PSEU22.952e-1446.323-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEPF5.035e-1446.323-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_PSEF55.035e-1446.323-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_PSEFR8.588e-1446.323-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
THIL_MYCLE1.122e-1354.55Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
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