CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEMY (3-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (strain ymp) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            +R  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 VRAMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFVELNEAFAAQALPVLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  A  KA+  AGL  + ID+ E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPATQKALKRAGLTIADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQK---LLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A A   P      P  A  KA+  AGL  + ID  E+NEAF+  +I   K   LL L  ++VN +GGA++LGHPLGCSG RI  TLL V+R K
Sbjct:  271 VRSMAVAGCDPAIMGYGPVPATKKALKRAGLTIADIDIVELNEAFAAQSIPVLKDLGLLDLVDDKVNLNGGAIALGHPLGCSGTRISTTLLNVMREK 367          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQK---LLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A A   P      P  A  KA+ANAGL    ID  E+NEAF+  A+   K   LL    ++VN +GGA++LGHP GCSG RI  TLL V++ K
Sbjct:  271 IRSMALAGVDPSIMGYGPVPATQKALANAGLSIEDIDVVELNEAFAAQALPVLKDLNLLDAMEDKVNLYGGAIALGHPFGCSGTRITGTLLSVMQDK 367          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+A AGL    IDY E+NEAF+  ++    + KLL    E+VN +GGA++LGHPLGCSGARI  TLL V+  K
Sbjct:  288 PVPATQKALARAGLTIDDIDYVELNEAFAAQSLPVAKDLKLLDKMEEKVNLNGGAIALGHPLGCSGARITGTLLNVMEWK 367          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: ATOB_HAEIN (Acetyl-CoA acetyltransferase OS=Haemophilus influenzae GN=atoB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 43/94 (45.74%), Postives = 52/94 (55.32%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR +A     P      P  A  KA+  AG+    ID  E NEAF+   +   K L LD  + N HGGA++LGHP+G SGARILVTLL  L  K
Sbjct:  276 IRSYASGGVDPSVMGLGPVPATQKALKKAGINLDDIDLIEANEAFASQFLGVGKDLNLDMNKTNIHGGAIALGHPIGASGARILVTLLHNLIEK 369          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_CHRVO (Acetyl-CoA acetyltransferase OS=Chromobacterium violaceum GN=phaA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I+G+A     PE     P  A  KA++ AG     +D  E NEAF+  A+   K LG   ++VN +GGA++LGHP+G SG R+LVTLL  ++ +
Sbjct:  275 IKGYALTGCEPEIMGIGPVSATRKALSKAGWTVEDLDLVEANEAFAAQALGVAKELGWGSDKVNVNGGAIALGHPIGASGCRVLVTLLHEMQRR 368          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
FADA_PSEMY1.122e-1345.263-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (... [more]
FADA_PSEAE1.122e-1346.323-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB1.122e-1346.323-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA71.122e-1346.323-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSE141.122e-1346.323-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_MARMS1.122e-1346.393-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
FADA_SACD21.465e-1346.393-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
FADA_ALCBS1.465e-1352.503-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
ATOB_HAEIN1.465e-1345.74Acetyl-CoA acetyltransferase OS=Haemophilus influe... [more]
THIL_CHRVO1.913e-1341.49Acetyl-CoA acetyltransferase OS=Chromobacterium vi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
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