CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2185 contig Csv1_Contig2185:904..1753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            IR  A A   P      P  +  KA+  AGL  + ID+ E+NEAF+  A+    + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 IRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_PARDE (Acetyl-CoA acetyltransferase OS=Paracoccus denitrificans GN=phaA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.499e-13
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = -1
Query:  587 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 850
            I  +A A   P+   T P  A  KA+  AG     +D  E NEAF+  AIA  + +G DP  VN +GGA+++GHP+G SG RIL TLL
Sbjct:  274 IASYATAGVDPQIMGTGPIPASRKALEKAGWSVGDLDLVEANEAFAAQAIAVNRDMGWDPSIVNVNGGAIAIGHPIGASGCRILNTLL 361          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I  +A A   P+   T P  A  KA+  AG   + I+  E NEAF+  A A  K LG DP  VN +GGA+++GHP+G SGAR+L TLL  ++ +
Sbjct:  276 IVSWATAGVDPQIMGTGPIPASRKALEKAGWSVADIELVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARVLNTLLFEMKRR 369          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P +AI K +   GLE  QI Y+EINEAF+   +   + L +  ++VN +GG+++LGHP+G SGARI+ TLL V++++
Sbjct:  279 PVVAIEKLLKRNGLEKDQISYFEINEAFASQVLCCLRKLQIGEDRVNRYGGSIALGHPIGASGARIVCTLLSVMKNE 355          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+A AG+  + +D  E+NEAF+  ++   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++ HK
Sbjct:  284 PVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEHK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+A AG+  + +D  E+NEAF+  ++   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++ HK
Sbjct:  284 PVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEHK 363          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
FADA_PSEPU1.913e-1345.263-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_PSEPK1.913e-1345.263-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP11.913e-1345.263-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEOL1.913e-1345.263-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
FADA_PSEE41.913e-1345.263-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
THIL_PARDE2.499e-1345.45Acetyl-CoA acetyltransferase OS=Paracoccus denitri... [more]
THIL_RHIME3.263e-1343.62Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
THIK_ENCCU3.263e-1345.453-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
FADA_SHESR3.263e-1347.503-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHESM3.263e-1347.503-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
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