CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+A AG+  + +D  E+NEAF+  ++   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++ HK
Sbjct:  284 PVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEHK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I+G A A   P      P  A  KA+  AGL    +D  E+NEAF+  ++   K LGL     E+VN +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 IKGMAIAGCDPSIMGYGPVPATQKALKRAGLSIEDMDVIELNEAFAAQSLPCAKDLGLLDVMDEKVNLNGGAIALGHPLGCSGARISTTLINLMEAK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I+G A A   P      P  A  KA+  AGL    +D  E+NEAF+  ++   K LGL     E+VN +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 IKGMAIAGCDPSIMGYGPVPATQKALKRAGLSIEDMDVIELNEAFAAQSLPCAKDLGLLDVMDEKVNLNGGAIALGHPLGCSGARISTTLINLMEAK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+  AGL    ID +E+NEAF+  ++   K LGL     E+VN +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  284 PVPATQKALKRAGLTIGDIDLFELNEAFAAQSLPCVKDLGLQDVVDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEEK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I+ +A+A   P+     P  A  +A++ A      +D  EINEAF+  A+A  + +G D  +VN +GGA+++GHP+G SG RILVTLL  ++ +
Sbjct:  276 IKSYANAGVDPKVMGMGPVPASKRALSRAEWTPQDLDLMEINEAFAAQALAVHQQMGWDTSKVNVNGGAIAIGHPIGASGCRILVTLLHEMKRR 369          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I+G A A   P      P  A  KA+  AGL    +D  E+NEAF+  ++   K LGL     E+VN +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  271 IKGMAIAGCDPSIMGYGPVPATQKALKRAGLAIEDMDVVELNEAFAAQSLPCAKDLGLLEVMDEKVNLNGGAIALGHPLGCSGARISTTLINLMEAK 367          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHISS (3-ketoacyl-CoA thiolase OS=Shigella sonnei (strain Ss046) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+A AGL  + +D  E+NEAF+  ++   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  284 PVPATKKALARAGLSVADLDLIELNEAFAAQSLPCVKDLGLQDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEEK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+A AGL    +D  E+NEAF+  ++   K LGL     ++VN +GGA++LGHPLGCSGARI  TL+ ++ HK
Sbjct:  284 PVPATQKALARAGLSIQDMDVIELNEAFAAQSLPCVKDLGLMDVVEDKVNLNGGAIALGHPLGCSGARISTTLINLMEHK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ECOUT (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain UTI89 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
FADA_SHEON3.263e-1347.503-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
FADA_VIBVY4.262e-1344.333-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_VIBVU4.262e-1344.333-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]
FADA_AERHH4.262e-1350.003-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
THIL_RALEH5.567e-1339.36Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
FADA_VIBPA5.567e-1344.333-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
FADA_SHISS5.567e-1344.333-ketoacyl-CoA thiolase OS=Shigella sonnei (strain... [more]
FADA_SHEFN5.567e-1347.503-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADA_SHEAM5.567e-1348.753-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
FADA_ECOUT5.567e-1344.333-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
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