CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ECOL5 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ECOK1 (3-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 / APEC GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            I  +A     P+   T P  A  KA+  AG +   +D  E NEAF+  A A  K LG DP  VN +GGA+++GHP+G SGARIL TLL  ++ +
Sbjct:  275 IVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR 368          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_MYCTU (Probable acetyl-CoA acetyltransferase OS=Mycobacterium tuberculosis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = -1
Query:  602 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARI 799
            P+ AI KA+   G+   Q+D  EINEAF+ VA+A+ + LGL+P+ VN +GGA+++GHPLG SG RI
Sbjct:  289 PANAINKALDREGISVDQLDVVEINEAFAAVALASIRELGLNPQIVNVNGGAIAVGHPLGMSGTRI 354          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIL_MYCBO (Probable acetyl-CoA acetyltransferase OS=Mycobacterium bovis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = -1
Query:  602 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARI 799
            P+ AI KA+   G+   Q+D  EINEAF+ VA+A+ + LGL+P+ VN +GGA+++GHPLG SG RI
Sbjct:  289 PANAINKALDREGISVDQLDVVEINEAFAAVALASIRELGLNPQIVNVNGGAIAVGHPLGMSGTRI 354          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  575 PEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 820
            PE     P+ AIP  + + GL  + +D +EINEAF+  A+ + +  G+D  +VN  GGA+++GHPLG +GAR   TLL  L+
Sbjct:  307 PELMGIGPAYAIPAVLEDLGLTVNDVDVFEINEAFASQALFSIQHCGIDESKVNPRGGAIAIGHPLGATGARQFATLLSELK 388          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGL---DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+A AG+  + +D  E+NEAF+  ++   K LGL     +++N +GGA++LGHPLGCSGARI  TL+ ++ HK
Sbjct:  284 PVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVEDKINLNGGAIALGHPLGCSGARISTTLINLMEHK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+A AGL  + +D  E+NEAF+  ++   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  284 PVPATQKALARAGLTVADLDVIELNEAFAAQSLPCVKDLGLQDVVEEKINLNGGAIALGHPLGCSGARISTTLINLMEEK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ENT38 (3-ketoacyl-CoA thiolase OS=Enterobacter sp. (strain 638) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL AS+ID +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASEIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_CITK8 (3-ketoacyl-CoA thiolase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL AS ID +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASKLALKKAGLAASDIDLFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
FADA_ECOL55.567e-1344.333-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15... [more]
FADA_ECOK15.567e-1344.333-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 ... [more]
THIL_ZOORA7.270e-1343.62Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]
THIL_MYCTU7.270e-1353.03Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_MYCBO7.270e-1353.03Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIK_YARLI7.270e-1342.683-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
FADA_SHESA7.270e-1346.253-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEDO7.270e-1347.503-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
FADA_ENT387.270e-1344.333-ketoacyl-CoA thiolase OS=Enterobacter sp. (strai... [more]
FADA_CITK87.270e-1345.363-ketoacyl-CoA thiolase OS=Citrobacter koseri (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
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